Pairwise Alignments

Query, 785 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

Subject, 429 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 99.8 bits (247), Expect = 3e-25
 Identities = 58/192 (30%), Positives = 106/192 (55%), Gaps = 11/192 (5%)

Query: 594 AFGVAYGAYLFALFGLLYGCWV-LFKGGVLTPVVRETAKVTSMVFTILIGSQLLNLVVIS 652
           A GVA    + ALFG   G  V +F   +L      T K+TSM+  ++I +  LN  + S
Sbjct: 244 AVGVAGAVVIAALFG---GVSVKMFADSILG-----TIKITSMIMLVVIAASFLNFTLAS 295

Query: 653 FGGEHYIQQFLKSFD-SELKVFLIVMVVLFILGFVLDFLEIIYIVIPIVGPVIYGGSFDP 711
            G    +Q  L     +   + L+V+++  +LGF ++ L ++ + IPI+ P++    FDP
Sbjct: 296 AGLGRELQSLLDGLGLTPTGLILVVVLIYIVLGFFIETLSLMVVTIPIIVPLVVAQGFDP 355

Query: 712 KWVTIMVAVNLQTSFLTPPFGFALFYLRGVAPKEVTTAHIYRGVLPFVLIQVVGLGILWM 771
            W  I++ V ++ + +TPP G  L+ ++G A K    + +  G +P+V+  ++ +G+L +
Sbjct: 356 IWFGILMIVLIEMALITPPVGLNLYVVQG-ARKSGKMSEVMVGAIPYVIAMLIMVGLLIL 414

Query: 772 FPSIVTIVPALM 783
           FPSI   +P+++
Sbjct: 415 FPSIALYLPSVL 426



 Score = 84.3 bits (207), Expect = 1e-20
 Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 28/188 (14%)

Query: 109 IVNRMNERVLAGASIETLLAVLMFVLMGITLERSKIANDLLTTMARVFGPLPGGLAVSIV 168
           ++  +   V + ++  TL+A+  FVL+G  L RS IA    + + R    LPGGL  + V
Sbjct: 39  LIRGLGNLVWSTSNNATLIAIPFFVLLGEILVRSGIATRTYSALDRWVSWLPGGLVHANV 98

Query: 169 VVGAFLAASTGIVGATVVTMGLLALPTMLRNNYSPELATGVIAASGTLGQIIPPSIVIVL 228
                 +A++G   AT  T+  +A+P   +  Y P L +G IAA GTLG +IPPSI +++
Sbjct: 99  ATATMFSATSGSSVATAATVATVAMPQAEKLGYDPRLFSGAIAAGGTLGIMIPPSINLIV 158

Query: 229 LGTLAGDLYSTAQEARAQEFGCSDALTYLGEPAVVSVGTLFQAALLPGIMLALLYALYAF 288
            G L                               S+  LF A L+PGI LAL +     
Sbjct: 159 YGFL----------------------------TQTSIPQLFLAGLVPGIALALGFMAITV 190

Query: 289 GYALLNPE 296
              L+ PE
Sbjct: 191 VICLIRPE 198