Pairwise Alignments

Query, 343 a.a., ribosomal large subunit pseudouridine synthase C from Phaeobacter inhibens DSM 17395

Subject, 330 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  171 bits (433), Expect = 2e-47
 Identities = 112/316 (35%), Positives = 175/316 (55%), Gaps = 22/316 (6%)

Query: 1   MITVSEDDADQRIDRWLRRLFPHVSQGRIEKMCRKGELRLDGGRVKANSRVAAGQVVRVP 60
           +I++ ED A QRID +L      V +  I ++ RKGE+R++  R+K   ++AAG  VRVP
Sbjct: 22  LISIDEDGAGQRIDNFLLAKLKGVPKSMIYRIVRKGEVRVNKKRIKPEYKLAAGDEVRVP 81

Query: 61  PLGASDLKPAEAPSYRISEADAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGL 120
           P+  ++     APS  ++      +   ++++D  +IVLNKPAG+AV GGSG    V   
Sbjct: 82  PVRVAEKDYRTAPSANLNR--VAQLEDRILFEDKQIIVLNKPAGIAVHGGSGVDYGVIES 139

Query: 121 SAALQFDAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFRHRATRKIYWALVAGVPT 180
             +L+   +    LVHRLD+DTSGVL++A+ R+A + L    R++  +K+Y ALV G   
Sbjct: 140 LRSLRPTCKFL-ELVHRLDRDTSGVLLIAKKRMALRHLHDQLRNKQMQKVYQALVRGQWQ 198

Query: 181 PYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYRVASRAAWVA 240
            +   +K  L+K         GE+++ ++S         K S T +  L R    A+ V 
Sbjct: 199 EHDRVVKAPLLKI----TLKSGERIVRVNSE-------GKPSETRFRVLRRF-DEASLVE 246

Query: 241 MEPITGRTHQLRAHMAEIGHPIAGDGKYGGSSQENLGDGWGAQLGGIISKKLHLHCRRMA 300
             P+TGRTHQ+R H    GHPIA D KY   S++   D   A+  G+  ++L LH  ++ 
Sbjct: 247 ASPVTGRTHQIRVHCQYQGHPIACDDKY---SEQKFDDAMRAK--GL--QRLFLHAAQLT 299

Query: 301 FEHPTTKKPLSITAPL 316
           F HP ++  +++ APL
Sbjct: 300 FTHPESETQMTVQAPL 315