Pairwise Alignments

Query, 343 a.a., ribosomal large subunit pseudouridine synthase C from Phaeobacter inhibens DSM 17395

Subject, 330 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  269 bits (688), Expect = 7e-77
 Identities = 156/343 (45%), Positives = 210/343 (61%), Gaps = 27/343 (7%)

Query: 2   ITVSEDDADQRIDRWLRRLFPHVSQGRIEKMCRKGELRLDGGRVKANSRVAAGQVVRVPP 61
           + V++D+   R+DRW +R +P ++ GR+EK+ R G++R+DG RVK+  R+ AGQ VRVPP
Sbjct: 6   VAVTQDEDGSRLDRWFKRRYPALTHGRLEKLLRTGQIRVDGKRVKSGERLEAGQQVRVPP 65

Query: 62  LGASDLKPAE---APSYRISEADAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVD 118
           LG     P+    A     +E + + +R  ++++D  +IV+NK AGLAVQGG+GT  H+D
Sbjct: 66  LGDEAPSPSSSGHAVPRPAAEGEIRALRRAILHEDAHLIVINKEAGLAVQGGTGTPHHLD 125

Query: 119 GLSAALQFDAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFRHRATRKIYWALVAGV 178
           G+  +L  D  E PRLVHRLDKDTSGVLVLART+ AA++LT+AFR R   K+YWA+V G 
Sbjct: 126 GMLESLA-DGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFRSREALKVYWAIVVGR 184

Query: 179 PTPYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYRVASRAAW 238
           P    G IK  L K  G    G GE+M      E++   G KR+ T +  + + A   AW
Sbjct: 185 PPMLQGTIKGALAKVAG----GRGERM------EINEEEG-KRAVTDFRVVDQAAKACAW 233

Query: 239 VAMEPITGRTHQLRAHMAEIGHPIAGDGKYGGSSQENLGDGWGAQLGGI-ISKKLHLHCR 297
           V + P TGRTHQLR H  E+G PI GDGKYGG          GA L G  + K++HLH R
Sbjct: 234 VELHPRTGRTHQLRVHCLEMGTPILGDGKYGGP---------GAFLEGTELPKRMHLHAR 284

Query: 298 RMAFEHPTTKKPLSITAPLPDHMKDSWDTFGWSEDLAAEDPFE 340
            +A  HP     L I AP P H  +S  T G++    A +PFE
Sbjct: 285 ALALPHP-AGGVLEIIAPPPPHFVESLKTLGFALS-DAPNPFE 325