Pairwise Alignments

Query, 343 a.a., ribosomal large subunit pseudouridine synthase C from Phaeobacter inhibens DSM 17395

Subject, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  148 bits (373), Expect = 2e-40
 Identities = 110/327 (33%), Positives = 158/327 (48%), Gaps = 42/327 (12%)

Query: 4   VSEDDADQRIDRWLRRLFPHVSQGRIEKMCRKGELRLDGGRVKANSR-VAAGQVVRV--- 59
           V  + A QR+D+WL  + P +S+ R++++  +  + ++G  +   SR V  GQ VRV   
Sbjct: 29  VDAEAAGQRLDKWLATVIPTLSRARLQQLIGEKRVSVNGQTIGEGSRRVKPGQTVRVEEP 88

Query: 60  PPLGASDLKPAEAPSYRISEADAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKH--V 117
           PP+ A+    A A +              V+Y+DD +IV++K AG+ V  G G   H  V
Sbjct: 89  PPIAATPQPEAIALT--------------VVYEDDDLIVIDKAAGMVVHPGPGNPDHTLV 134

Query: 118 DGLSAALQ-----FDAEEKPRLVHRLDKDTSGVLVLARTRLAAQSLTAAFRHRATRKIYW 172
           + L A           E +P +VHRLDKDTSG+++ A+T LA   L   F   +  + Y 
Sbjct: 135 NALLAHCGPSLSGIGGERRPGIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHSLTREYL 194

Query: 173 ALVAGVPTPYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYRV 232
            LV G P P  G I   L + P   K     KM  +       + G KR+ THY  +  V
Sbjct: 195 CLVWGRPRPAAGSIDAPLGRHPTQRK-----KMAVV-------SRGGKRALTHYRVVGDV 242

Query: 233 ASRAAWVAMEPITGRTHQLRAHMAEIGHPIAGDGKYGGSSQENLGDGWGAQLGGIISK-- 290
              A+ V     TGRTHQ+R HMA IGHP+ GD  YG     N+       L   I++  
Sbjct: 243 EGIASIVKCTLSTGRTHQVRVHMAHIGHPLLGDAVYG---HRNIPKKLPGDLSERIARLT 299

Query: 291 KLHLHCRRMAFEHPTTKKPLSITAPLP 317
           +  LH   + F HP T + L   + LP
Sbjct: 300 RQALHSFHLGFLHPRTGESLEFLSELP 326