Pairwise Alignments

Query, 343 a.a., ribosomal large subunit pseudouridine synthase C from Phaeobacter inhibens DSM 17395

Subject, 329 a.a., ribosomal large subunit pseudouridine synthase C (RefSeq) from Shewanella sp. ANA-3

 Score =  166 bits (421), Expect = 6e-46
 Identities = 113/322 (35%), Positives = 174/322 (54%), Gaps = 24/322 (7%)

Query: 1   MITVSEDDADQRIDRWLRRLFPHVSQGRIEKMCRKGELRLDGGRVKANSRVAAGQVVRVP 60
           +IT+ ED  DQRID +L  +   V +  I ++ RKGE+R++  R+K   ++  G VVRVP
Sbjct: 22  LITIDEDHLDQRIDNFLITVLKGVPKSMIYRIVRKGEVRVNKKRIKPEYKLQIGDVVRVP 81

Query: 61  PLGASDLKPAEAPSYRISEADAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDGL 120
           P+  ++     APS  +S      +   ++++D+ +IVLNKPAG+AV GGSG    V  +
Sbjct: 82  PVRMAEQDNRTAPSANLSR--VSQLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGV--I 137

Query: 121 SAALQFDAEEK-PRLVHRLDKDTSGVLVLARTRLAAQSLTAAFRHRATRKIYWALVAGVP 179
            A      ++K   LVHRLDKDTSGVL++A+ R A + +    R++  +K Y ALV G  
Sbjct: 138 EALRSLRPQQKFLELVHRLDKDTSGVLLVAKKRSALKHMHDQLRYKKMQKDYLALVKGEW 197

Query: 180 TPYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDSTPGAKRSHTHYATLYRVASRAAWV 239
           +     +K  L+K         GE+++ +++         K S T +  + R       V
Sbjct: 198 SAQDKVVKQPLLKL----TLKSGERIVRVNAE-------GKPSETRFKIVQRYQG-CTLV 245

Query: 240 AMEPITGRTHQLRAHMAEIGHPIAGDGKYGGSSQENLGDGWGAQLGGIISKKLHLHCRRM 299
              P+TGRTHQ+R H   +GHPIA D KY   S++   D   A LG     +L LH   +
Sbjct: 246 QASPVTGRTHQIRVHCQYMGHPIACDEKY---SEQAFDDSMRA-LG---LTRLFLHAAEL 298

Query: 300 AFEHPTTKKPLSITAPLPDHMK 321
            F HP   + + ++APL D+++
Sbjct: 299 MFIHPENDEVMRVSAPLDDNLQ 320