Pairwise Alignments

Query, 335 a.a., phage late control gene D protein (GPD) from Phaeobacter inhibens DSM 17395

Subject, 409 a.a., phage late control protein from Herbaspirillum seropedicae SmR1

 Score =  161 bits (407), Expect = 3e-44
 Identities = 106/330 (32%), Positives = 170/330 (51%), Gaps = 16/330 (4%)

Query: 8   PFFRVEVDGKDISSTLAPRLISLSLTDAAGVQSDNVQITLSDTTLFGRLAEPKAGAEIRV 67
           P FR+ ++ KDIS  ++ RLIS++L +  G ++D + I L D    G+L  P  GA++  
Sbjct: 6   PAFRIIIEEKDISRPVSDRLISITLRECRGDEADQLDIELDDGD--GKLKIPPMGAKLSF 63

Query: 68  ---WLGYPFQLKYMGLFIADNVIVGGPPDQMTITGIASVNGETSSGKTALTDQKKRSWPS 124
              W G P   K  G F+   V   G PD++TI         ++S   A   Q+ RS+  
Sbjct: 64  ALGWQGSPLVDK--GAFVVSEVEHSGSPDRITI------RARSASMIDAFRQQRDRSFHE 115

Query: 125 GTTISALVQKIAGEHGLEHAVSESLAKVALSHIDQIDESDINLLSRIARDHDAIAKPGNG 184
            TT+ A+V  +A  +GL   +S SL  +A+ H+DQ  ESD  LL R+ + +DA+A   N 
Sbjct: 116 -TTLGAVVDAVAASNGLASGISASLRAIAIKHLDQTHESDSALLRRLGKKYDAVATVKND 174

Query: 185 RLIMAKRGESLTASGAPMPVLSITPKKISRWQYQNSTREKAGSVVAVYQDHGKGKSVECI 244
            L+     +S TASG P+PV+ +      + +Y +S  +    V A + D   G+    +
Sbjct: 175 TLLFMPINDSRTASGKPLPVVKVVRALGDQHRYHSSESDAYSGVRAFWMDEKYGRRRSVV 234

Query: 245 AGEGEPKQRLKRRFPNKDAAEQAAASELQRLKRAGRGLSVTMP-GDPDAMAEAKLSAAGF 303
           AG+    +RL+  F N+  A  AA +E QR++R      + +  GD   M ++ +  +GF
Sbjct: 235 AGQAGNSKRLRTTFANEADARTAAVAEWQRIERGLATFEMQLALGDARIMPQSPVVVSGF 294

Query: 304 RSYVD-GEWLITKAEHSLDSGGYRTAISAE 332
           ++ +D  EWL     HS++  G+ T I  E
Sbjct: 295 KADIDTTEWLSKTVTHSINGNGFTTRIEFE 324



 Score = 28.1 bits (61), Expect = 4e-04
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 244 IAGEGEPKQRLKRRFPNKDAAEQAAASELQRLK 276
           +AG+ +  + LKR + +K +A++AAA E  ++K
Sbjct: 365 LAGKADNAKTLKRTYASKQSAKRAAALEWAKIK 397