Pairwise Alignments

Query, 232 a.a., ribosomal large subunit pseudouridine synthase E from Phaeobacter inhibens DSM 17395

Subject, 199 a.a., Pseudouridine synthase, Rsu from Synechococcus elongatus PCC 7942

 Score =  207 bits (528), Expect = 9e-59
 Identities = 110/188 (58%), Positives = 137/188 (72%), Gaps = 9/188 (4%)

Query: 3   RLIRFNKPYDVLPQFTDRGSDSSPRATLSDWIDLPGVYPAGRLDRDSEGLMLLTDHGRLQ 62
           R + F+KPYDVL QF+   SD   + TL D+ID+P VYP GRLDRDSEGL+LLT++G LQ
Sbjct: 4   RYLLFHKPYDVLCQFSP--SDRPDQQTLKDYIDVPEVYPVGRLDRDSEGLLLLTNNGALQ 61

Query: 63  AWISDPQHKMPKTYWVQVEGTPDAAAIQALANGVELKDGMTRPAKAALIEEPEGIWARNP 122
             +  P+    +TYWVQVE  P  AA+QAL  GV+++D  TRPAK   +++P+ I  R+P
Sbjct: 62  HRLCHPRFGHDRTYWVQVEREPTEAALQALRQGVQIQDYRTRPAKVQRLDDPQ-IPERDP 120

Query: 123 PIRVRKSVPDSWIALTIREGRNRQVRRMTAAVGHPTLRLIRAAIGI------WTLDGLSP 176
           PIR RK+VP +W+ALT++EGRNRQVRRMTAAVGHPTLRLIRAAI          L GL+P
Sbjct: 121 PIRFRKTVPTAWLALTLQEGRNRQVRRMTAAVGHPTLRLIRAAIATHPDQPPLQLQGLAP 180

Query: 177 GTWEDLEA 184
           GTW DL A
Sbjct: 181 GTWRDLTA 188