Pairwise Alignments

Query, 232 a.a., ribosomal large subunit pseudouridine synthase E from Phaeobacter inhibens DSM 17395

Subject, 264 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  211 bits (537), Expect = 1e-59
 Identities = 108/179 (60%), Positives = 134/179 (74%), Gaps = 5/179 (2%)

Query: 4   LIRFNKPYDVLPQFTDRGSDSSPRATLSDWIDLPGVYPAGRLDRDSEGLMLLTDHGRLQA 63
           ++ FNKP+DVL QFTD       R TL D+I +  VY AGRLDRDSEGL+LLT+ G+LQ+
Sbjct: 88  IVLFNKPFDVLCQFTDEQG----RQTLKDFIPIQDVYAAGRLDRDSEGLLLLTNDGQLQS 143

Query: 64  WISDPQHKMPKTYWVQVEGTPDAAAIQALANGVELKDGMTRPAKAALIEEPEGIWARNPP 123
            I++P+ K  KTYWVQVEG P   AIQAL +GV LKDG T PAK   I EP+ +W RNPP
Sbjct: 144 RITEPKKKTDKTYWVQVEGIPSDEAIQALRDGVTLKDGPTLPAKVERIAEPD-VWPRNPP 202

Query: 124 IRVRKSVPDSWIALTIREGRNRQVRRMTAAVGHPTLRLIRAAIGIWTLDGLSPGTWEDL 182
           +R RK +P SW+A+TI EGRNRQVRRMTA VG+PTLRLIR  IG W+L+G++ G ++ L
Sbjct: 203 VRERKQIPTSWLAITICEGRNRQVRRMTAHVGYPTLRLIRYKIGQWSLNGVANGEYKVL 261