Pairwise Alignments

Query, 232 a.a., ribosomal large subunit pseudouridine synthase E from Phaeobacter inhibens DSM 17395

Subject, 182 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  108 bits (270), Expect = 7e-29
 Identities = 69/179 (38%), Positives = 97/179 (54%), Gaps = 9/179 (5%)

Query: 9   KPYDVLPQFTDRGSDSSPRATLSDWIDLP-GVYPAGRLDRDSEGLMLLTDHGRLQAWISD 67
           KPY  L QF   G     +  L +  + P G+   GRLD DSEGL+LLT  G+    +  
Sbjct: 4   KPYGYLSQFV--GERRKRKPLLGELANFPTGIMAIGRLDHDSEGLLLLTTDGKTSHAVRS 61

Query: 68  PQHKMPKTYWVQVEGTPDAAAIQALANGVEL----KDGMTRPAKAALIEEPEGIWARNPP 123
               + K Y++Q++G     AI +L  GVE+    +   T P +A  +++   +  R   
Sbjct: 62  KS--IEKEYYLQLDGEITEQAISSLCEGVEIGIKGEKYRTLPCRARRLDQAPDLPPRGRK 119

Query: 124 IRVRKSVPDSWIALTIREGRNRQVRRMTAAVGHPTLRLIRAAIGIWTLDGLSPGTWEDL 182
           IR  +  P SW+A+TI EG+NRQ+R+MTAAVG  TLRL+R  IG   L  L PG  + L
Sbjct: 120 IRDARHGPTSWLAITITEGKNRQLRKMTAAVGFATLRLVRVRIGDIRLGTLQPGEVKSL 178