Pairwise Alignments

Query, 470 a.a., nitrogen regulation protein NtrC from Phaeobacter inhibens DSM 17395

Subject, 462 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

 Score =  195 bits (496), Expect = 2e-54
 Identities = 145/490 (29%), Positives = 231/490 (47%), Gaps = 63/490 (12%)

Query: 4   TVLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVGEGKGDVVISDVMMPDGNGLE 63
           T L+ DD+  IR +L   LTR G        LT+  + + +    + ++D+ +PDGNG+E
Sbjct: 5   TALIVDDEPDIRELLEITLTRMGITTLTAPDLTSAQKLLEQNTTHLCLTDMNLPDGNGIE 64

Query: 64  MLPKIADDRPGLPVIVISAQNTIMTAIKAAEAEAYDYLPKPFDLPELMKRTAKALTERRS 123
           ++  I    P  PV VI+A   + TAI++ +A A+D++ KP +LP L +           
Sbjct: 65  LVQWIQKHSPATPVAVITAYGNMDTAIESLKAGAFDFVSKPVELPRLRE----------- 113

Query: 124 GPGALRAATQAGGPAGGAETAGESHEDLPLVGRTEVMQTLYRLIARVMNTDIPLLITGES 183
               + +A +   P   AE   +  E   L+G++  ++ L     ++  +  P+ I+GES
Sbjct: 114 ---LVNSALKLAEPKADAEDTAD--EPGLLLGKSPEIRKLRNQTRKLARSQAPVFISGES 168

Query: 184 GTGKSLIARSMHDLSDRRTLPFVRAEAADLAS------------------LEGPAQLLAE 225
           G+GK L+AR +H    RR  PF+      + S                  +E    L   
Sbjct: 169 GSGKELVARMIHLQGPRREGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRS 228

Query: 226 VRGGTLLLDELADLSEEAQARVVRMMDAP-----GDHQP-----RFIATSQQDLTAAMEA 275
             GGTL LDE+ADL    Q +++R +        GD +      R ++ + ++L   ++ 
Sbjct: 229 ANGGTLFLDEVADLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQE 288

Query: 276 GGLRQDLYYRISGTELPVPALRARVDDISLLCAHFLTR-AENEGAPHRRLSEAAREPLRQ 334
           G  RQDL+YRI+  EL VP LR R DDISLL  H L R A+        L+ AA + LR 
Sbjct: 289 GSFRQDLFYRINVIELSVPPLRERPDDISLLSNHILERIAKEYECDPASLTPAAVDRLRS 348

Query: 335 FPWPGNVRQLENVVRRLALTARSEEISLDEVNAALGAQ--SGGEPMAATGSTLSSEKLSE 392
           + +PGNVR+LENV+ R      +++I  D+++   G Q  +    + A G     E ++ 
Sbjct: 349 YDFPGNVRELENVLERAFTLCDADQIDADDLHLGNGVQHAASASQIIAEGQVGDGEGIAV 408

Query: 393 SVARHLQRYFDLHGDMLPPPGLYARLMREVETPLIEISLAMTGGNQAKCADLLGINRNTL 452
                     DL G            + ++E   IE +L  T  N+   A  LGI+   L
Sbjct: 409 PDGE-----IDLEG-----------YLEKIERQAIEKALEATRWNKTAAAKRLGISFRAL 452

Query: 453 RKKITDLDIE 462
           R ++  L +E
Sbjct: 453 RYRLKKLGME 462