Pairwise Alignments

Query, 978 a.a., ribonuclease E from Phaeobacter inhibens DSM 17395

Subject, 808 a.a., ribonuclease, Rne/Rng family from Synechococcus elongatus PCC 7942

 Score =  248 bits (632), Expect = 2e-69
 Identities = 223/758 (29%), Positives = 336/758 (44%), Gaps = 135/758 (17%)

Query: 265 DIRPVRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTAR 324
           D+ P+R  R     I E++  +Q +LVQV+KE   +KG  LT  +SL GRY VLMP ++ 
Sbjct: 123 DLGPLRLRRSAG-AITELLAPQQKVLVQVMKEPTSSKGPRLTGNISLPGRYLVLMPYSS- 180

Query: 325 GGGISRKITNAADRKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQI 384
           G  +SR+I + ++R +L+ ++V L  P G GL+VRT      +  I  D E LQR WEQ 
Sbjct: 181 GVSLSRRIMSESERNRLRALSV-LIKPAGMGLLVRTEADGIAEELIIEDLESLQRQWEQT 239

Query: 385 RELTLKSIAPAKIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKM-----IMP 439
            +L   + APA +  + D I+R +RD+Y   ++ ++V+   G +  K  +       I P
Sbjct: 240 LQLADSTPAPALLTRDDDFIQRVLRDMYDEGVNRIVVDSHTGLKRVKQHLSAWGAGEIAP 299

Query: 440 SHAKNVKNYQDQLPLFARFQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRAT 499
                ++ Y+D+  +   F+V + +     P V L SGGY++I  TEAL  +DVNSG  T
Sbjct: 300 GLL--IEQYRDRSSILDYFRVNAAIREALKPRVDLPSGGYVIIEKTEALTVVDVNSGSFT 357

Query: 500 KEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTD 559
           +  +  ET L TN EAA E+ARQLRLR++AG+I++DFIDMD R++   V +     L+ D
Sbjct: 358 RSATARETVLWTNCEAAAEIARQLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFTRALRHD 417

Query: 560 RARIQVGRISGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEE 619
           ++R Q+ ++S  GL+E++R+R    + E  + PC  C G G                   
Sbjct: 418 KSRPQISQLSELGLVELTRKRQGQNIYELFSTPCTTCGGLG------------------- 458

Query: 620 GTRRRSREVLVRCPVSIANYLMNQKREHIAQIETRYGLS--VRIEGDPHLVSPDFSLEKF 677
                                      H+A +    G    VR    P + +P       
Sbjct: 459 ---------------------------HVAHLPGEVGAQPIVRTSDRPPITTP------- 484

Query: 678 KTASRVVPVATAPVVSVDTSIMDQVD-----ADEASDEADEAEVEANDTDVA-EVQAAGD 731
                   VAT   VS  T++    D     A  A   A       N+T  A E++  GD
Sbjct: 485 --------VATTTPVSASTNLAPSNDSYLSPARSALARATGVPPLLNETTPASELENNGD 536

Query: 732 EGEGDNKPKRKRRRRRRRKSSGAD-GDDSNNTAQGDANADDQKASDDAAADDADAQAEPA 790
              G    +R  +RR RR+  G + G    NT      +     ++  AA   D+     
Sbjct: 537 SYSGLGLLERSPQRRGRRRGGGRNAGPSLPNTGINPEISASPGLAEALAATTRDS----- 591

Query: 791 EGSDAKEAEGDGEVKKRTRTRTRSRSRKKRTDETVAAEAEAPAETD-------------A 837
               A E + D E    +R     R R++  +  V    E   E               A
Sbjct: 592 ----APERDRDSESTGMSR-----RPRRQPPEPPVIVAVELTLEEQELYAWMGASPLIRA 642

Query: 838 KAEPE-GQAIVTEAKAEDSNAAESEAPVASAEAPVEGAEEPAVLNGDAAAEVPAAAEAET 896
           ++ PE  Q ++    A++S   E E  +A+A+A  +         GD+     A    ET
Sbjct: 643 ESLPEPSQPVLVGVYAQES---EKEPAIAAAKALYDQRSRHRRGGGDSGRPTLARENRET 699

Query: 897 AAA--------------TEEAAPAQIVADEA----TAEDVVADQDTPAAEASA-PAAAEP 937
           A+A              T    P+ I  + A    TAE + A + TPA    A P  AEP
Sbjct: 700 ASAESSESRSDSSSTAETPAEQPSSITTEGATSAVTAEVIAASEPTPAEPTPAEPTPAEP 759

Query: 938 QAADAPTEEPEAAPEPALATAEAEPASP----PKPKRR 971
             A+    EP  AP  A+A+  +E  +P    P P RR
Sbjct: 760 TPAEPTPVEPTPAP-VAVASEASEVTAPASEVPAPGRR 796



 Score = 35.0 bits (79), Expect = 2e-05
 Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 8/78 (10%)

Query: 1   MAKKMLIDATHAEETRVVVVDG-NKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFV 59
           M K+++I    AE+ R+  V   +++EEF   ++   Q+ G+IYL  V  V P + AAFV
Sbjct: 55  MPKQIVI----AEQHRIAAVFAEDQIEEF-IVAKGTHQI-GDIYLGVVENVLPGIDAAFV 108

Query: 60  DYG-GNRHGFLAFSEIHP 76
           + G   ++GF+  +++ P
Sbjct: 109 NIGDSEKNGFIHVTDLGP 126