Pairwise Alignments
Query, 978 a.a., ribonuclease E from Phaeobacter inhibens DSM 17395
Subject, 1128 a.a., ribonuclease (RefSeq) from Shewanella loihica PV-4
Score = 423 bits (1087), Expect = e-122
Identities = 269/742 (36%), Positives = 387/742 (52%), Gaps = 64/742 (8%)
Query: 276 RYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNA 335
R I+EV+K Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I
Sbjct: 87 RPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EG 145
Query: 336 ADRKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPA 395
+R +LK EL+VP G GLIVRTAG + +E+K D + LQ W I E AP
Sbjct: 146 DERTELKAAMSELEVPQGMGLIVRTAGVGKDAAELKWDLKVLQHHWAAIEEAAQNRPAPF 205
Query: 396 KIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLF 455
I++E ++I R+IRD R++ EVL++ +R Y AK + ++ P +K Y+ ++PLF
Sbjct: 206 LIHQESNVIVRAIRDYLRRDVGEVLIDHQRIYEQAKQHVALVRPDFVDRIKRYEAEVPLF 265
Query: 456 ARFQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEA 515
FQ+E+ + + F V+L SGG IVI TEAL +ID+NS RATK G IEETAL TNLEA
Sbjct: 266 THFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEA 325
Query: 516 AEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLME 575
A+E+ARQLRLRDL GL+VIDFIDM ++ VE RM+D + DRAR+Q+GRIS FGLME
Sbjct: 326 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHHDRARVQLGRISRFGLME 385
Query: 576 MSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPVS 635
MSRQRLRP + E+ CP CHG G IR +SLALSILR +EEE + + ++ PV
Sbjct: 386 MSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLALSILRLMEEEAIKENTSQIEAIVPVD 445
Query: 636 IANYLMNQKREHIAQIETRYGLSVRIEGDPHLVSPDFSLEKFKTASRVV----------- 684
+A +L+N+KR+ I E R+ + V + DP++ +PD+ + + + ++
Sbjct: 446 VAAFLLNEKRKAIRITEQRHDVEVYVIPDPNMTTPDYRVTRHRKDDQISESSYKLLEQPE 505
Query: 685 -----------PVATAPVVSVDTSIMDQVDADEASDEADEAEVEANDTDVAEVQAA---- 729
+ P + ++ + A A AE +A++ AA
Sbjct: 506 SKLYEPRKLERAASPEPALKGFSTPVKDAPTQAAPAPAKPAEKAQEPGLIAKLFAAIGKL 565
Query: 730 -GDEGEGDNKPKRKRRRRRRRKSSGADGDDSNN---TAQGDANADDQKASDDAAADDADA 785
G E E + +K + RR ++ + ++ N ++ + D K S A DDAD+
Sbjct: 566 FGGEPEQPKEEVKKEQPRRNAQNRNSRRNNRRNDTRKSRDEGKETDNKRSRSAKPDDADS 625
Query: 786 QAEPAEG-------------SDAKEAEGDGEVKKRTRTRTRSRSRKKRTDETVAAEAEAP 832
++ + S +K+ E + K+ R R + R R V +E +
Sbjct: 626 RSAKSRNEKRQKRDRDDKPQSQSKDTESQAQQPKQEAARERRQRRNMRRKVRVQSEQQL- 684
Query: 833 AETDAKAEPEGQAIVTEAKAEDSNAAESEAPVASAEAPVEGAEEPAVLNGDAAAEVPAAA 892
A+ AI KA D A + + P +P +
Sbjct: 685 ------ADEAALAIEVAEKANDEQVQVPAAEATADDKPQRQKRQPR----------KSKP 728
Query: 893 EAETAAATEEAAPAQIVADEATAEDVVADQDTPAAE---ASAPAAAEPQAADAPTEEPEA 949
+ + A EE A+ VADE TA + A + A E E A +A EE A
Sbjct: 729 KQDKADKLEEETQAEQVADEDTASEQPAVETQAANEPKDTEVTTQVEAHADEAQAEEASA 788
Query: 950 APEPALATAEAEPASPPKPKRR 971
P+ + + EP + RR
Sbjct: 789 QPQEGESEGKREPREGQRRSRR 810
Score = 90.9 bits (224), Expect = 4e-22
Identities = 43/77 (55%), Positives = 54/77 (70%)
Query: 3 KKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62
K+MLI+AT +EE RV +VDG ++ + D ES Q NIY K+TRVEPSL+AAFVDYG
Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61
Query: 63 GNRHGFLAFSEIHPDYY 79
RHGFL EI +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78
Score = 49.7 bits (117), Expect = 1e-09
Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 29/191 (15%)
Query: 91 EEERAYAEAQRARDDEEDAKPARRQSRSRRGRTKAADVKSADVVETKDVSPETAENGADI 150
EE A A A+ A +E KP RR +++ V ++ S E A+ +
Sbjct: 904 EEAPAKAAAEEASQEESKPKPRRRAPKAK-------------VASEEETSVEEAQQSLPL 950
Query: 151 AGMETIDLTDEVAVAETKLADVPEAAQTEAAADDATAAEPVVEEAVKDASDTPEAQDASS 210
AG L +EV AE L PE + +A+ + A AE V +A + A+ + A
Sbjct: 951 AGEAKASLKEEVQ-AELDLTSTPE--EVKASQEAAPQAEDVAAQAEEPAA----VETAPV 1003
Query: 211 ESGEAEGAADTATTEADDAADDADADDSADKDAAADA-TAKDE---NIESVADEDDSEDI 266
E+ E E A TEA A + + A K AA A TAK + +E+ ED E+
Sbjct: 1004 ETPEVE---TEAKTEAPAAKESSAASAPMAKPAAVPAPTAKVKPAAKVEATPAEDKPEET 1060
Query: 267 R--PVRKPRPR 275
KP P+
Sbjct: 1061 ASDEAEKPAPK 1071