Pairwise Alignments

Query, 978 a.a., ribonuclease E from Phaeobacter inhibens DSM 17395

Subject, 875 a.a., ribonuclease, Rne/Rng family from Sphingomonas koreensis DSMZ 15582

 Score =  632 bits (1631), Expect = 0.0
 Identities = 382/823 (46%), Positives = 492/823 (59%), Gaps = 50/823 (6%)

Query: 173 PEAAQTEAAADDATAAEPVVEEAVKDASDTPEAQDASSESGEAEGAADTATTEADDAADD 232
           P+  Q      DA   E   E A ++A+   EA D   +  +    A+    E  +   D
Sbjct: 76  PDYYQIPKEDRDALLREEA-EHAAEEAALREEADDDHDDEHDEHDGAEDGDVEVVERPGD 134

Query: 233 ADADDSADKDAAADATAKDENIESVADEDDSEDIRPVRKPRPRRYKIQEVIKVRQVLLVQ 292
            D + S  ++ A+ +  +       +D D  E +R  R    RRYKIQ+VI+ RQVLLVQ
Sbjct: 135 EDEETSEGEEGASASGGRRRRGRKGSD-DQVEALRQRRMNLRRRYKIQDVIRRRQVLLVQ 193

Query: 293 VVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIAVELDVPT 352
           VVKEERGNKGAALTTYLSLAGRYCVLMPNTA GGGISRKI+++ADRK+LK I  +L +P 
Sbjct: 194 VVKEERGNKGAALTTYLSLAGRYCVLMPNTAHGGGISRKISSSADRKRLKSIMSDLKLPP 253

Query: 353 GAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLY 412
             G IVRTAG +RTK+EIKRD++YL RLW++IRE TLKS APA +Y + DLIKR+IRD+Y
Sbjct: 254 TMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTLKSSAPALVYGDSDLIKRAIRDIY 313

Query: 413 SREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLFARFQVESYLGAMFNPTV 472
           +R+I+EV+VEGE GYR AKDFMK++MPSHAK VK+Y D +PLF R  VE  L AM++P V
Sbjct: 314 NRDIEEVIVEGEEGYRHAKDFMKLLMPSHAKKVKHYSDAVPLFQRAHVEDQLSAMYHPVV 373

Query: 473 QLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLI 532
           QLKSGGY+VI  TEALV+ID+NSGR+T+E +IE+TA  TNLEA +E+ARQLRLRD+AGL+
Sbjct: 374 QLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEATQEIARQLRLRDMAGLV 433

Query: 533 VIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTAP 592
           VIDFIDMD   N   VEK MK+ LK DRARIQVGRIS FGLMEMSRQRLR G++EA+T  
Sbjct: 434 VIDFIDMDHGSNVRKVEKAMKEALKNDRARIQVGRISAFGLMEMSRQRLRTGVLEASTVT 493

Query: 593 CPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPVSIANYLMNQKREHIAQIE 652
           CPHC GTGL+R+  S  LS LR IE+E  R R   + +RC    A Y++N+KR  IA+IE
Sbjct: 494 CPHCEGTGLVRTASSAGLSALRLIEDEAARGRGSLLTLRCSQEAAFYVLNKKRADIAEIE 553

Query: 653 TRYGLSVRIEGDPHLVSPDFSLEKFKTASRVVPVATAPVVSVDTSIMDQVDADEASDEAD 712
            RYG++V I  D  L     S+E         P   A +  ++  I++++D     +E D
Sbjct: 554 DRYGVTVEILSDGELEGARMSVEASGPPPAHAPKFAAAIEEIEEDIVEEID-----EEED 608

Query: 713 EAEVEANDTDVAEVQAAGDEGEGDNKPKRKRRRRRRRKSSGADGDDSNNTAQGDANADDQ 772
           E +VEA +      +   D GEG+ + +++RRRRR R+             + D + +  
Sbjct: 609 EEDVEAREPR----RERSDRGEGEGEGRKRRRRRRGRRG-----------RRDDEHGEHG 653

Query: 773 KASDDAAADDADAQAEPAEGSD----AKEAEGDGEVKKRTRTRTRSRSRKKRT---DETV 825
           +  D   A D D +AEP E  +    A+ A  +GE +KR R R R   R+  T    E V
Sbjct: 654 ERQDAEDAADEDGEAEPEEAGEAETLAETAADEGETRKR-RRRGRRGGRRGATGEGGEAV 712

Query: 826 AAEAEAPAETDAKAEPEGQAIVTEAKAEDSNAAESEAPVASAEAPVEGAEEPAVLNGDAA 885
            AE   PA          + +V EA A+       +A V +    VE A EP V   +AA
Sbjct: 713 EAEVAEPAGDVEPVAVVAEPVVEEAPAKPKRTRRKKADVEAEAPAVEAAPEPVV---EAA 769

Query: 886 AEVPAAAEAETAAATEEAAPAQIVADEATAEDVVADQDTPAAEASAPAAAEPQA------ 939
           AE   A EA           A +   EA A  V A  +  A  A+ P A E  A      
Sbjct: 770 AEPVVAEEAPAKPKRPRRKKADV---EAEAPAVEAAPEPVAEAAAGPVAEEAPAKPKRRS 826

Query: 940 ---ADAPTE---EPEAAPEPALATAEAEPASPPK--PKRRGWW 974
              A AP E   EP AA   A   A+ EP +  +    RRGWW
Sbjct: 827 RAKAAAPVEQDLEPTAAETAAAEPADGEPEAEGEGGEPRRGWW 869



 Score =  161 bits (408), Expect = 2e-43
 Identities = 84/152 (55%), Positives = 100/152 (65%), Gaps = 2/152 (1%)

Query: 1   MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD 60
           M  +MLIDA H EETRV VV GN++EEFDFES  ++QL GNIYLAKVTRVEPSLQAAFV+
Sbjct: 1   MTMRMLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVE 60

Query: 61  YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAQRARDDEEDAKPARRQSRSRR 120
           YGGNRHGFLAFSEIHPDYYQIP  DR+AL+ EE  +A  + A    E+A           
Sbjct: 61  YGGNRHGFLAFSEIHPDYYQIPKEDRDALLREEAEHAAEEAAL--REEADDDHDDEHDEH 118

Query: 121 GRTKAADVKSADVVETKDVSPETAENGADIAG 152
              +  DV+  +    +D      E GA  +G
Sbjct: 119 DGAEDGDVEVVERPGDEDEETSEGEEGASASG 150