Pairwise Alignments

Query, 978 a.a., ribonuclease E from Phaeobacter inhibens DSM 17395

Subject, 1050 a.a., ribonuclease E from Cupriavidus basilensis FW507-4G11

 Score =  405 bits (1040), Expect = e-116
 Identities = 261/723 (36%), Positives = 370/723 (51%), Gaps = 72/723 (9%)

Query: 275 RRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITN 334
           R  +IQ+ +   Q L+VQV KEERGNKGAALTT++SLAGRY VLMPN  RGGG+SR+I  
Sbjct: 85  RNARIQDALHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRI-E 143

Query: 335 AADRKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAP 394
             DR++L++   +L VP G  +I RTAG  R+  E++ D  YL +LW+ I      + AP
Sbjct: 144 GEDRQELRETMGQLAVPEGMSIIARTAGIGRSAEELQWDLNYLLQLWKAIDGAAGDNKAP 203

Query: 395 AKIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPL 454
             IY E  L+ R+IRD +  +I E+L++ +  Y  A+ FM ++MP +   VK Y+D +PL
Sbjct: 204 LLIYLESSLVIRAIRDYFQPDIGEILIDTDEIYEQARAFMSVVMPDNMNRVKKYRDDVPL 263

Query: 455 FARFQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLE 514
           F+RFQ+E  + + ++  V L SGG IVI  TEALV++DVNS RATK   IEETAL+TNLE
Sbjct: 264 FSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVSVDVNSARATKGADIEETALRTNLE 323

Query: 515 AAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLM 574
           AA+E+ARQLRLRDL GLIVIDFIDM+  K    VE R+KD L+ DRAR+Q+G+IS FGLM
Sbjct: 324 AADEIARQLRLRDLGGLIVIDFIDMEASKAQKDVETRLKDALRHDRARVQMGKISRFGLM 383

Query: 575 EMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPV 634
           E+SRQRLRP + E +   CP C+GTG IR  +S AL +LR I+EEG +  +  +  + PV
Sbjct: 384 ELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQVLRIIQEEGMKENTAAIHCQVPV 443

Query: 635 SIANYLMNQKREHIAQIETRYGLSVRIEGDPHLVSPDFSLEKFK---------TASRVVP 685
            +A +L+N+KR+ I  IE R+ ++V +  + HL +P + LE+ +          AS  + 
Sbjct: 444 EVAAFLLNEKRQDINLIEMRFKVNVLLIPNKHLETPHYKLERLRHDDPRLEDSMASYKMA 503

Query: 686 VATAPVVSVDTSIMDQVDAD-------------------------EASDEADEAEVEAND 720
            A A  +  DTS   +   D                         E +   + A   A  
Sbjct: 504 EAAAKELEADTSYSSRKKEDAKPRQEAAVKGITPEQPAPVSVPRAERAPRPEAAAAAARP 563

Query: 721 TDVAEVQAAG-------------------------DEGEGDNKPKRKR-RRRRRRKSSGA 754
               +    G                         D  +   + +R+R +R  R +  G 
Sbjct: 564 VPATQPVVGGGFIGWLKNLFGAKPAAPAVEPAKPVDAEQRSAENRRERGQRGERGEGRGQ 623

Query: 755 DGDDSNNTAQGDANADDQKASDDAAADDADAQAEPAEGSDAKEAEGDGEVKKRTRTRTRS 814
            G+      +      D++            + E  E +D  E   +    +  R   R 
Sbjct: 624 RGERGGERGERGGERGDRQGRGQRGERAPQERGERTERADRGEQRTERVEARGERGEQRG 683

Query: 815 RSRKKRTDETVAAEAEAPAETDAKAEPEG-QAIVTEAKAEDSNAAESEAPVASAEAPVEG 873
              ++R +    A  +A  E     +PEG  A  TE + E       E      +   E 
Sbjct: 684 ERGEQRGERNSRAPRQAALEVQPARQPEGAPAERTEGRGEGRRDRNQERRERQRDRQRER 743

Query: 874 AEEPAVLNGDAAAEVPAAAEAETAAATEEAAPAQIVADEATAEDVVADQDTPAAEASAPA 933
            + P    G+A   + A A A TAA+        +VA  A A  V +  D   A    P 
Sbjct: 744 GDAPR--EGEATEGLAAEAVAATAAS--------VVAAPAVAAAVASHDDADNARTDLPE 793

Query: 934 AAE 936
             E
Sbjct: 794 GTE 796



 Score = 87.0 bits (214), Expect = 6e-21
 Identities = 41/90 (45%), Positives = 59/90 (65%)

Query: 3  KKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62
          K+ML +AT  EE RV +VDG K+ + D E+  + Q  GNIY   +TR+EPSL+A FV+YG
Sbjct: 2  KRMLFNATQQEELRVAIVDGQKLIDIDIEAAGREQRKGNIYKGVITRIEPSLEACFVNYG 61

Query: 63 GNRHGFLAFSEIHPDYYQIPVADREALMEE 92
            RHGFL F E+   +++  V  R A +++
Sbjct: 62 EERHGFLPFKEVARAFFKEGVDVRNARIQD 91