Pairwise Alignments
Query, 978 a.a., ribonuclease E from Phaeobacter inhibens DSM 17395
Subject, 1098 a.a., RNAse E (RefSeq) from Shewanella sp. ANA-3
Score = 417 bits (1072), Expect = e-120
Identities = 262/711 (36%), Positives = 383/711 (53%), Gaps = 34/711 (4%)
Query: 276 RYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNA 335
R I+EV+ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I
Sbjct: 87 RPNIKEVVSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EG 145
Query: 336 ADRKKLKDIAVELDVPTGAGLIVRTAGAKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPA 395
+R +LK+ +L+VP G GLIVRTAG + +E+K D + LQ W I E AP
Sbjct: 146 DERTELKEAMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQHHWAAITEAAQSKPAPF 205
Query: 396 KIYEEGDLIKRSIRDLYSREIDEVLVEGERGYRIAKDFMKMIMPSHAKNVKNYQDQLPLF 455
I++E ++I R+IRD R++ E+L++ R + AK + ++ P + VK Y+ ++PLF
Sbjct: 206 LIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVPLF 265
Query: 456 ARFQVESYLGAMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEA 515
FQ+ES + + F V+L SGG IVI TEAL +ID+NS RATK G IEETAL TNLEA
Sbjct: 266 THFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALNTNLEA 325
Query: 516 AEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLME 575
A+E+ARQLRLRDL GL+VIDFIDM ++ VE R++D + DRAR+Q+GRIS FGLME
Sbjct: 326 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLME 385
Query: 576 MSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSLALSILRQIEEEGTRRRSREVLVRCPVS 635
MSRQRLRP + E+ CP CHG G IRS +SLALSILR +EEE + + ++ PV
Sbjct: 386 MSRQRLRPSLEESAAHICPRCHGQGTIRSTESLALSILRLMEEEAIKENTSQIEAIVPVD 445
Query: 636 IANYLMNQKREHIAQIETRYGLSVRIEGDPHLVSPDFSLEKFKT---------------- 679
+A +L+N+KR+ I E R+ + V + DPH+++PD+ + + +T
Sbjct: 446 VAAFLLNEKRKAIRITEQRHDVEVYVIPDPHMMTPDYRVIRHRTDDEIDESSYKRIEQPE 505
Query: 680 ----ASRVVPVATAPVVSVDTSIMDQVDADEASDEADEAEVEANDTDVAEVQAAGDEGEG 735
R + AP ++ Q A+ A++ E A G
Sbjct: 506 AKLYEPRKLERTAAPAPALKGFTAPQKVEQAAAPTANKVEATEPGFFSKLFSAIGAFFSS 565
Query: 736 DNKPKRKRRRRRRRKSSGADG----DDSNNTAQGDANADDQKASDDAAADDADAQAEPAE 791
+KP ++ ++ S + N+T + N D KA + + A+
Sbjct: 566 SDKPAAEKTTETKKSDSQTANANRRNRRNDTRRTRNNQDADKAKEGTREPRTRNAKKSAD 625
Query: 792 GSDAKEAEGDGEVKKRTRTRTRSRSRKKRTDETVA-AEAEAPAETDAKAEPEGQAIVTEA 850
A+E + + RT+ +SR + E VA ++ + P + A+ + + + +
Sbjct: 626 APQAQERPAREKDENAKRTKPEPKSRNQAPKEVVAESQDDTPKQEVARERRQRRNMRRKV 685
Query: 851 KAEDSNAAESEAPVASAEAPVEGAEEPAVLNGDAAAEVPAAAEAETAAATEEAAPAQ--I 908
+ +++N SEAP+ E A A N D A E ++ET A P +
Sbjct: 686 RIDNANET-SEAPIQEEVILAEVAAVNAA-NTDVATE----PQSETKAPRSRRQPRKETA 739
Query: 909 VADEATAEDVVADQDTPAAEASAPAAAEPQAADAPTEEPEAAPEPALATAE 959
VA+E Q + E + A ADAP++ E+ A A+
Sbjct: 740 VANETAEATDAVSQAEASTEVAVEAPVVENRADAPSDVTESVKTEAETDAD 790
Score = 90.9 bits (224), Expect = 4e-22
Identities = 43/77 (55%), Positives = 54/77 (70%)
Query: 3 KKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62
K+MLI+AT +EE RV +VDG ++ + D ES Q NIY K+TRVEPSL+AAFVDYG
Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61
Query: 63 GNRHGFLAFSEIHPDYY 79
RHGFL EI +Y+
Sbjct: 62 AERHGFLPLKEIAREYF 78
Score = 37.4 bits (85), Expect = 6e-06
Identities = 49/166 (29%), Positives = 65/166 (39%), Gaps = 31/166 (18%)
Query: 91 EEERAYAEAQ----RARDDEED--AKPARRQSRSRRGRTKAADVKS-------ADVVETK 137
+E+ A A AQ A D++D A A+ + KA +V + A VVE
Sbjct: 832 DEQGASAPAQFVPNDALGDDQDYPAPSAQTAEAAETTEAKAIEVAAESTVTSPATVVEAA 891
Query: 138 DVSPETAENGADIAGMETIDLTDEVAVAETKLADVPEAAQTEAAADDA------------ 185
DVS ++ E I+ VAE K E A T+A AD A
Sbjct: 892 DVSVVAETTASNAVETEVIEAVATEQVAEIK----AEVATTKAPADTAVNNKAETSVKTK 947
Query: 186 -TAAEPV-VEEAVKDASDTPEAQDASSESGEAEGAADTATTEADDA 229
A EPV EAV +A P A ++ A + T EAD A
Sbjct: 948 EVAVEPVKTVEAVTEAVVAPAETPAQPKAEAKAVAVEAVTPEADKA 993