Pairwise Alignments

Query, 990 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1071 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  398 bits (1022), Expect = e-114
 Identities = 328/1109 (29%), Positives = 518/1109 (46%), Gaps = 178/1109 (16%)

Query: 12   LVLLVFSALM--VKAQTGSVSGKVLDETGLPLPGASVVVKG-TTRSTSTDANGNYKLGGL 68
            L+L++F+AL   V AQT +++G V D TG P+ GAS+V KG TT  T TD +GN+ L   
Sbjct: 11   LLLMIFAALSLSVSAQTITLNGNVKDTTGEPIIGASIVEKGNTTNGTITDLDGNFSLKVP 70

Query: 69   SDGSITLSASFVGYQTLDKAVSISANATVNFQLVPDAQKLNEVVVIGYGTAEKKNLTGSI 128
            ++ ++ +S  ++G +T +  ++I   + ++  L  DA+ L+EVVVIGYGTA++K++TGS+
Sbjct: 71   ANATVVIS--YIGMKTQE--IAIKGKSKIDVTLSDDAKALDEVVVIGYGTAKRKDITGSV 126

Query: 129  TTVSAKDFQKGAITTPEQLIQGKVAGVNIISNSGQPGVGSQIRIRGGASLNASNDPLVVI 188
             TV+A+      + +  + + GK+AGV I +  G P    +IR+RGG S+   N PL ++
Sbjct: 127  ATVNAEALTVVPVASATEALTGKMAGVQITTTEGSPDAEMKIRVRGGGSITGDNTPLFIV 186

Query: 189  DGVPFSGNTIDNAPSPLSLINPNDIETFTVLKDANATAIYGSRASNGVILITTKKGGSGA 248
            DG P            +S I  +DIE  TVLKDA++TAIYGSR +NGVIL+TTK G  G 
Sbjct: 187  DGFPVES---------ISDIPASDIEDMTVLKDASSTAIYGSRGANGVILVTTKSGKEGK 237

Query: 249  PVINFSTNNSIATVARKVDVLSADQVRA--------------------YVNANGNATQKA 288
              +N++   S   +A++++ LS+                         Y    GN     
Sbjct: 238  ISVNYNAYYSWKKMAKQLNTLSSGDYAKWQYELAMLNSGKHDTINPDDYTKVFGNYQDID 297

Query: 289  LL-GTANTDWQDAIYQR-AFTSDNNLSIAGSFKGVPYRVSAGYLDQDGLLITDKLKRGTG 346
            L       +WQD ++ R   T ++NLSI G      +  S  ++D   ++     KR   
Sbjct: 298  LYENIEGNNWQDQVFGRTGHTFNHNLSINGGSDKTKFAFSYAHMDDKAIMQDSDFKRDNL 357

Query: 347  SITLSPRLFKDHLKIDLNLKGSLTDSHFANAGAINSAIQFDPTQPIYADNKYGNYFEWT- 405
            S+ ++ +  K  + +D +++ S T  + A A    S +         AD++  +   +T 
Sbjct: 358  SLKVNHKPNK-RVALDFSVRYSNTTINGAGANESKSEVS-------SADSRMKDVMIYTP 409

Query: 406  ---QGTGSAMVPNPNAPRNPVALIRLQDNNGNAARSVGNAKFDYSFHFLPELHANLNLGY 462
               +       P+     NP  L+ + DN    +R   N    +++ F+  L      G 
Sbjct: 410  FNFKDLSDGYDPDLQL-TNP--LVSVADNARQQSRQTFNYNGSFTWEFIDNLKFKTEFGL 466

Query: 463  D--VSKGYGSIAVPTYAAQSAATSGSFS----------RALKTEADKFSEFYLNYAHTVE 510
            D   +K      V TY ++    +   +          R   T    F +   N  H++ 
Sbjct: 467  DHYYNKDKRFYGVTTYNSRINGNNQPIAVFTSKERKTFRNTNTLNYDFKKILKNKDHSLS 526

Query: 511  --------SIKSRFDVTAGYGYYDIATTGYNFTNYTGLGVPIVTPVFPFSVERNKMLSYY 562
                     +KS  D      Y  + T    F N +  G    T  F ++ + + +LSY+
Sbjct: 527  LLVGQELIKVKSNTDTDEVRFYPKLFTADQAF-NLSSQGTAFSTDKF-YNAD-DILLSYF 583

Query: 563  GRFNYTLADKYILSATMRADASSKFAESNRWGYFPSVGFTWRIIGENFLKDSKV-LSDLK 621
             R NY    KY+ SAT RAD SSKF++ NRWG+FPS    WR+  ENF++ +K  L DLK
Sbjct: 584  ARANYDFQGKYLASATFRADGSSKFSKDNRWGFFPSAALAWRMSSENFMESTKSWLDDLK 643

Query: 622  LRLSYGETGNKD--------------GADIGNYNYIAKYYASSNTGQYQIGNTFYNYYAP 667
            LR+SYG  GN +              GA IG  N ++ Y+    T   Q+ N        
Sbjct: 644  LRISYGTAGNNNIPSDQTSTIWSAGSGASIGWMNNMSSYW----TTGAQMAN-------- 691

Query: 668  AGYDPDLRWETTTTYNAGLDYGFLGGRLYGSIDVYYKKTADLLSKITIPV-GTNFSNELV 726
                PDL+WETT T NAGLD+  L G+L G+++ Y+  T DLL  I  PV G  +S +  
Sbjct: 692  ----PDLKWETTHTRNAGLDFTLLNGKLSGTVEYYWNTTKDLL--INFPVSGVGYSFQ-Y 744

Query: 727  TNVGNMDVKGAEVSLNFTAVKTENTTWDFGVNASYNKRKVTNL-------------TLNP 773
             N+G  + KG EV+LN+ A+  +N    F  N  +NK KV +L             + + 
Sbjct: 745  RNLGETENKGWEVTLNWNAINKKNYALSFNANVGFNKNKVKSLGSLMDYSADSGWASTDI 804

Query: 774  NSGFKIDAGDISG------GTGIHLKYNAVNQIPQSYFVYKQVYDA-----------GGK 816
             S FK+  G   G        G +   +    I   + +   V DA           G  
Sbjct: 805  QSDFKVQPGHSVGEIYGFVSDGRYEVSDFEGFIDGKWVLKAGVADASDIIGEKYLRPGAM 864

Query: 817  PLEGVYQDLNGDGTITTDDQYFYKSPDPQFTFGFNTSFTYKKWSVNTVLRASLGNYVYD- 875
             L+ V  D + D  +T DDQ      +P  + GF+ +     + +      S+GN +Y+ 
Sbjct: 865  KLKNV--DGSEDNKVTKDDQKVIGDTNPFCSGGFSVNARVYGFDLTANFTYSIGNDIYNA 922

Query: 876  -----NVSSNFGIKSNL-----------LSSVGILNNASSDI----LNTG----FTNTQY 911
                   SS +  ++ +           L++ G + N  + +     NT     +T    
Sbjct: 923  NKIEYTSSSKYKYRNMIDVMAEEKRWTNLNADGTICNDPTQLAAMNANTSMWSPWTQKYV 982

Query: 912  LSDYYIKNASFLKMDNLGLAYNIGK--LSKDGTATMRISANCQNVFVVTKYKGLDPELAT 969
            L+D+ +++ SFL++  L + Y + +    K G   +R  A   N+F +T Y G DPE++T
Sbjct: 983  LTDWAVEDGSFLRLATLSIGYTLPQTLTRKVGIQNLRFYATGYNLFCITNYSGFDPEVST 1042

Query: 970  --------GIDYNLYPRPRTYTLGLNVGF 990
                    G+DY+ YPR R Y +GLN+ F
Sbjct: 1043 RTKSALTPGVDYSAYPRSRQYVIGLNLTF 1071