Pairwise Alignments

Query, 990 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1003 a.a., SusC, outer membrane protein involved in starch binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  752 bits (1942), Expect = 0.0
 Identities = 416/1006 (41%), Positives = 616/1006 (61%), Gaps = 41/1006 (4%)

Query: 11   LLVLLVFSALMVKAQTGSVSGKVLDETGLPLPGASVVVKGTTRSTSTDANGNYKLGGLSD 70
            +L+  +F ++   AQ  +V G V D TG P+ GA+VVVKGTT  T TD +GN++L     
Sbjct: 13   MLIAGIFLSIDAFAQQITVKGIVKDTTGEPVIGANVVVKGTTTGTITDFDGNFQLSAKQG 72

Query: 71   GSITLSASFVGYQTLDKAVSISANATVNFQLVPDAQKLNEVVVIGYGTAEKKNLTGSITT 130
              I +S  F+GYQ  +  V+    A +N  L  D + L+EVVVIGYG  +K ++TGS+  
Sbjct: 73   DIIVVS--FIGYQPQELPVA----AQMNVILKDDTEILDEVVVIGYGQVKKNDMTGSVMA 126

Query: 131  VSAKDFQKGAITTPEQLIQGKVAGVNIISNSGQPGVGSQIRIRGGASLNASNDPLVVIDG 190
            +   +  KG  T  + ++ GK+AGV++ISN G PG G+QIRIRGG+SLNASNDPL+VIDG
Sbjct: 127  IKPDELSKGITTNAQDMLSGKIAGVSVISNDGTPGGGAQIRIRGGSSLNASNDPLIVIDG 186

Query: 191  VPFSGNTIDNAPSPLSLINPNDIETFTVLKDANATAIYGSRASNGVILITTKKGGSG-AP 249
            +      I    + LS++NP DIET TVLKDA+ATAIYGSRASNGVI+ITTKKG +G AP
Sbjct: 187  LAIDNEGIKGMANGLSMVNPADIETLTVLKDASATAIYGSRASNGVIIITTKKGKNGQAP 246

Query: 250  VINFSTNNSIATVARKVDVLSADQVRAYVNANGNATQKALLGTANTDWQDAIYQRAFTSD 309
             ++++ + S +   ++ DVLS D+ RAY N        A LGTANTDWQD I++ A ++D
Sbjct: 247  SVSYNGSVSFSKTQKRYDVLSGDEYRAYANQLWGDKLPADLGTANTDWQDQIFRTAVSTD 306

Query: 310  NNLSIAGSFKGVPYRVSAGYLDQDGLLITDKLKRGTGSITLSPRLFKDHLKIDLNLKGSL 369
            +++SI G FK +PYRVS GY D +G++ T   +R T S+ L+P  F+DHLK ++N K   
Sbjct: 307  HHVSINGGFKNLPYRVSLGYTDDNGIVKTSNFRRFTASVNLAPSFFEDHLKFNINAKFMN 366

Query: 370  TDSHFANAG-AINSAIQFDPTQPIYADNK----YGNYFEWTQGTGSAMVP------NPNA 418
              + +A+ G AI  A+  DPT+P+Y++       G Y++    T     P      NPN+
Sbjct: 367  GKNRYADTGAAIGGALAIDPTRPVYSNEDPYQFTGGYWQNINSTTGFSNPDWKYTSNPNS 426

Query: 419  PRNPVALIRLQDNNGNAARSVGNAKFDYSFHFLPELHANLNLGYDVSKGYGSIAVPTYAA 478
            P+NP+A + L+++  N+   VGN   DY FHFLP+L  + ++G + ++G  +  V  Y  
Sbjct: 427  PQNPLAALELKNDKANSNDFVGNVDVDYKFHFLPDLRLHASIGGEYAEGTQTTIVSPY-- 484

Query: 479  QSAATSGSFSRALKTEADKFSEFYLNYAHTVESIKS----RFDVTAG----YGYYDIATT 530
                + G+       +  ++ ++ L+Y   V+ IKS     FD+  G    + + +    
Sbjct: 485  ----SFGNNYYGWNGDVTQY-KYNLSYNIYVQYIKSLGANDFDIMVGGEEQHFHRNGFEE 539

Query: 531  GYNFTNYTGLGVPIVTPVFPFSVERNKMLSYYGRFNYTLADKYILSATMRADASSKFAES 590
            G  + +YT                RN ++SY+GR NY+L ++Y+ + TMR D SS+F++ 
Sbjct: 540  GQGWDSYTQEPHDAKLREQTAYATRNTLVSYFGRLNYSLLNRYLFTFTMRWDGSSRFSKD 599

Query: 591  NRWGYFPSVGFTWRIIGENFLKDSKVLSDLKLRLSYGETGNKDGADIGNYNYIAKYYASS 650
            NRWG FPS+   W+I  ENFLKD  VLSDLKLRL +G TG ++  D  ++ Y+  Y  ++
Sbjct: 600  NRWGTFPSLALGWKIKEENFLKDVNVLSDLKLRLGWGITGQQNIGD--DFAYLPLYVVNN 657

Query: 651  NTGQYQIGNTFYNYYAPAGYDPDLRWETTTTYNAGLDYGFLGGRLYGSIDVYYKKTADLL 710
               QY  G+T+Y+   P  ++ +L+WE TTT+NAGLD+GFL GR+ G ID Y++KT DLL
Sbjct: 658  EYAQYPFGDTYYSTSRPKAFNENLKWEKTTTWNAGLDFGFLNGRITGGIDGYFRKTDDLL 717

Query: 711  SKITIPVGTNFSNELVTNVGNMDVKGAEVSLNFTAVKTENTTWDFGVNASYNKRKVTNLT 770
            + + IPVGTNF+ ++  N+G+++  G E S+N   + T++ TWD   N ++N  ++T LT
Sbjct: 718  NSVKIPVGTNFNAQMTQNIGSLENYGMEFSINAKPIVTKDFTWDLSYNITWNHNEITKLT 777

Query: 771  LNPNSGFKIDAGD-ISGGTGIHLKYNAVNQIPQSYFVYKQVYDAGGKPLEGVYQDLNGDG 829
               +S + ++AGD IS G    ++ + V     S++VY+QVYD  GKP+E ++ D NG+G
Sbjct: 778  GGDDSDYYVEAGDKISRGNNTKVQAHKVGYAANSFYVYQQVYDENGKPIENMFVDRNGNG 837

Query: 830  TITTDDQYFYKSPDPQFTFGFNTSFTYKKWSVNTVLRASLGNYV-YDNVSSNFGIKSNLL 888
            TI + D+Y YK P      G  +   YK +  +  LRASL NYV YD +S+   + ++ L
Sbjct: 838  TIDSGDKYIYKKPAGDVLMGLTSKMQYKNFDFSFSLRASLNNYVYYDFLSNKANVSTSGL 897

Query: 889  SSVGILNNASSDILNTGFTNT-QYLSDYYIKNASFLKMDNLGLAYNIGKLSKDGT---AT 944
             S    +N S++ +  G +    Y+SDY+I NASFL+ DN+ L Y+   L K  T     
Sbjct: 898  FSNNAYSNTSAEAVALGLSGQGDYMSDYFIHNASFLRCDNITLGYSFQNLWKTQTYKGVG 957

Query: 945  MRISANCQNVFVVTKYKGLDPELATGIDYNLYPRPRTYTLGLNVGF 990
             R+ A  QN F+++KYKGLDPE+ +GID N YPR  T+ LGL++ F
Sbjct: 958  GRVYATVQNPFIISKYKGLDPEVKSGIDANPYPRAMTFLLGLSLQF 1003