Pairwise Alignments

Query, 990 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1001 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  431 bits (1108), Expect = e-124
 Identities = 321/1024 (31%), Positives = 497/1024 (48%), Gaps = 87/1024 (8%)

Query: 13   VLLVFSALMVKAQTGSVSGKVLDETGLPLPGASVVVKGTTRSTSTDANGNYKLGGLSDGS 72
            +L VF +L   AQ  + SG+VLD    PL G SV  KGTT    TD +GN+ L   S+  
Sbjct: 19   ILAVFFSLSASAQQFTASGQVLDAQKEPLIGVSVQEKGTTNGAITDLDGNFTLTVQSNA- 77

Query: 73   ITLSASFVGYQTLDKAVSISANATVNFQLVPDAQKLNEVVVIGYGTAEKKNLTGSITTVS 132
             TL  S+VGY++ ++  S     T    L  D + L EVVVIGYG+ ++K++T +I+TVS
Sbjct: 78   -TLIFSYVGYKSQEQKASRQMKVT----LQEDNEVLEEVVVIGYGSVKRKDVTTAISTVS 132

Query: 133  AKDFQKGAITTPEQLIQGKVAGVNIISNSGQPGVGSQIRIRGGASLNASNDPLVVIDGVP 192
             KD     I +  Q IQGK AG+++I  SG PG    IR+RG  S+N SNDPL V+DGVP
Sbjct: 133  TKDLDVRPIVSAGQAIQGKAAGISVIQPSGTPGGEMSIRVRGTTSMNGSNDPLYVVDGVP 192

Query: 193  FSGNTIDNAPSPLSLINPNDIETFTVLKDANATAIYGSRASNGVILITTKKGGSGAPVIN 252
                 +DN    +  ++PNDIE+  +LKDA++ +IYGSRA+NGVILITTK G +G   ++
Sbjct: 193  -----VDN----IKFLSPNDIESMQILKDASSASIYGSRAANGVILITTKAGATGKAKVS 243

Query: 253  FSTNNSIATVARKVDVLSADQVRAYVNANGNATQKALLGTANTDWQDAIYQRAFTSDNNL 312
             +    +  VA KV+ L+A Q +   +  G  +    L    TDW D  Y+     +  +
Sbjct: 244  LTAQFGLNKVADKVESLNAAQYKELQDEIGLVSLPDGL-PDRTDWFDETYKTGKMQNYQV 302

Query: 313  SIAGSFKGVPYRVSAGYLDQDGLLITDKLKRGTGSITLSPRLFKDHLKIDLNLKGSLTDS 372
            +++   + + Y +SAGYLD+ G+L     KR    + L  ++ +  L +  N+  S   S
Sbjct: 303  AVSNGNEKMKYYLSAGYLDEKGILDISYYKRYNFRVNLENQI-RSWLTVSANISYSDYTS 361

Query: 373  H-------FANAGAINSAIQFDPT-QPIYADNKYGNYFEWTQGTGSAMVPNPNAPRNPVA 424
            +        AN G +  A+   PT  PI+       Y+    G G+   P  N       
Sbjct: 362  NGGGAMGTGANRGGVVLAVINTPTYAPIWDALNPNQYYNNFYGVGNITNPLEN------- 414

Query: 425  LIRLQDNNGNAARSVGNAKFDYSFHFLPELHANLNLGYDVSKGYGSI---AVPTYAAQSA 481
            + R ++N     R +  A  +     LPEL     L  D      +     + T   ++ 
Sbjct: 415  MARAKNNKDKENRLL--ASGNVLLTLLPELKFKSTLTLDRRNAVNTTFLDPISTAWGRNQ 472

Query: 482  ATSGSFSRALKTEADKFSEFYLNYAHTVESIKSRFDVTAGYGY--YDIATTGYNFTNYTG 539
                S +R + T     + F  N        +   +V AG  +   D + +  N ++Y  
Sbjct: 473  YGEASDNRNMNTVLTFDNVFTYNKNFK----RHGLEVMAGSSWTDSDYSNSWINGSHYRN 528

Query: 540  LGVPIVTPVFPFSVERN-------KMLSYYGRFNYTLADKYILSATMRADASSKFAESNR 592
              +  +      + +          ++S++GR  Y    KY+L+A +RAD SSK    +R
Sbjct: 529  DLIQTLNAANKIAWDNTGTGASQWGIMSFFGRVAYNFDSKYLLTANLRADGSSKLHPDHR 588

Query: 593  WGYFPSVGFTWRIIGENFLKDSKVLSDLKLRLSYGETGNKDGADIGNYNYIAKY------ 646
            WG FPS    WR+  E F+ D   + D K+R  +G+TGN+ G  IG+Y Y+ +Y      
Sbjct: 589  WGVFPSFSAAWRVSSEKFMADLTWIDDFKIRGGWGQTGNQSG--IGDYAYLQRYNIGRIE 646

Query: 647  ----YASSNTGQYQIGNTFYNYYAPAGYDPDLRWETTTTYNAGLDYGFLGGRLYGSIDVY 702
                 A  +T  Y   N             DL WETTT  N GLD   L GRL  ++D Y
Sbjct: 647  WFKVAAEGDTTDY--ANAVPTISQANLRTSDLTWETTTQTNIGLDLTVLNGRLTFNMDYY 704

Query: 703  YKKTADLLSKITIPVGTNFSNELVTNVGNMDVKGAEVSLNFTAVKTENTTWDFGVNASYN 762
            YKKT ++L  +++P G   +  +  N G M  KG E++++    +    TWD   N S+N
Sbjct: 705  YKKTKNMLMNVSLPAGAAAATSIARNEGEMTNKGFELTISSKNFRGGAFTWDTDFNISFN 764

Query: 763  KRKVTNLTLNPNSGFKIDAGDISGGTGIHLKYNAVNQIPQSYFVYKQVYDAGGKPLEG-- 820
            + K+T L L     +     D+         Y   N+  ++   +      G  P  G  
Sbjct: 765  RNKLTKLELQ-KVYYDAKTADVVN------DYVVRNEPGRALGGFYGYISDGVDPETGEL 817

Query: 821  VYQDLNGDGTITTDDQYFYKSPDPQFTFGFNTSFTYKKWSVNTVLRASLGNYVYD-NVSS 879
            +Y+DL+GDG I+T D+ +   P+P FT+G   +F++K ++++  ++ S GN +++ +   
Sbjct: 818  MYRDLSGDGKISTSDRTYIGDPNPDFTYGLTNTFSWKGFNLSVFIQGSYGNDIFNASRIE 877

Query: 880  NFGIKSNLLSSVGILN--NASSDILNTGFTNTQYL-SDYYIKNASFLKMDNLGLAYNI-G 935
              G+      S  +LN       I N    N + L S Y+I++ S+L++ ++ L+YN  G
Sbjct: 878  TEGMYDGKNQSTKVLNRWKIPGQITNVPKANFKLLNSTYFIEDGSYLRLKDVSLSYNFKG 937

Query: 936  K-LSKDGTATMRISANCQNVFVVTKYKGLDPEL--------ATGIDYNLYPRPRTYTLGL 986
            K L K G   ++      N+   T Y G+DPE+          GID+  YP  R+Y  G+
Sbjct: 938  KLLQKWGITRLQPYFTATNLLTWTSYSGMDPEVNQWGNSGTVQGIDWGTYPHSRSYVFGI 997

Query: 987  NVGF 990
            NV F
Sbjct: 998  NVEF 1001