Pairwise Alignments

Query, 990 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 988 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  445 bits (1145), Expect = e-129
 Identities = 301/1024 (29%), Positives = 502/1024 (49%), Gaps = 95/1024 (9%)

Query: 4   FYLLKQGLLVLLVFSALMVKAQTGSVSGKVLDETGLPLPGASVVVKGTTRSTSTDANGNY 63
           + +L  G L + V S   V  +  +V+GKV+D +G PL G S+ V+     T+TD NGN+
Sbjct: 23  YCILMAGFLCVCVPSLYGV--ENLNVTGKVVDSSGEPLIGVSIKVENKNMGTTTDINGNF 80

Query: 64  KLGGLSDGSITLSASFVGYQTLDKAVSISANATVNFQLVPDAQKLNEVVVIGYGTAEKKN 123
            L  +   ++ L  +++G +T  + V+++ N  +N  +  ++ +L EVV IGYGT +K+ 
Sbjct: 81  TLADIPKNTV-LVLTYIGMET--QKVTVTQNR-LNIVMRENSVQLEEVVAIGYGTVKKEE 136

Query: 124 LTGSITTVSAKDFQKGAITTPEQLIQGKVAGVNIISNSGQ-PGVGSQIRIRGGASLNASN 182
           LT ++T V  + F  G  T+P  L+ GKV G++I + SG  P    +I +RG  S+ A +
Sbjct: 137 LTSAVTKVGEESFNAGVTTSPINLLNGKVPGLSIRNTSGNDPNASPEIHLRGIGSIRAGS 196

Query: 183 DPLVVIDGVPFSGNTIDNAPSPLSLINPNDIETFTVLKDANATAIYGSRASNGVILITTK 242
            PL+++DG         +  S L  IN NDI++F VLKD ++ AIYG+R SNGVI++ TK
Sbjct: 197 APLIIVDGTY-------STMSELQAINANDIKSFNVLKDGSSAAIYGTRGSNGVIIVETK 249

Query: 243 KGGSGAPVINFSTNNSIATVARKVDVLSADQVRAYVNANGNATQKALLGTANTDWQDAIY 302
               G   I +++        RK++++SAD+   Y+   G++T     G + TDW D + 
Sbjct: 250 NASKGKASIEYTSYYYTERPVRKLEMMSADEYMGYLKDKGHSTINNDYGFS-TDWTDQLI 308

Query: 303 QRAFTSDNNLSIAGSFKGVPYRVSAGYLDQDGLLITDKLKRGTGSITLSPRLFKDHLKID 362
           +  F+    +S +   +    R S GY D + ++I    K+ TG +      F   L I+
Sbjct: 309 RNNFSYYQGVSFSTGTENSSIRGSVGYRDSESMVINTGNKQLTGRVNFKQYFFDKKLTIE 368

Query: 363 LNLKGSLTDSHFANAGAINSAIQFDPTQPIYADNKYGNYFEWTQGTGSAMVPNPNAPRNP 422
             L G+ T S + + GA   AI + PT P+Y  N+ G +FE+  G G         P NP
Sbjct: 369 GTLNGANTQSDYTDYGAFMQAIVYHPTAPVY--NQEGKFFEYA-GVG---------PYNP 416

Query: 423 VALIRLQDNNGNAARSVGNAKFDYSFHFLPELHANLNLGYDVSKGYGSIAVPTYAAQSAA 482
           VAL+   DN G      GN   +        ++A ++   D  +G   I+  +  +    
Sbjct: 417 VALLSQVDNRGERYTYSGNLSANLKVLPCLSVYAMMSANNDTYEGSKYISRDSRYSVLGG 476

Query: 483 TSGSFSRALKTEADKFSEFYLNYAHTVESIKSRFDVTAGYGYYDIATTGYNFTNYTGL-G 541
             G           +  E Y NY+ + +         AGY +     T +N +N   L  
Sbjct: 477 FEGQADMNTYFYKKRTFEAYANYSFSTDV--HNLTALAGYSFNREDRTWHNASNSGFLTD 534

Query: 542 VPIVTPV------------FPFSVERNKMLSYYGRFNYTLADKYILSATMRADASSKFAE 589
           +P    +                 + +K+++++GR NY+   KY+ +A++R + S++F E
Sbjct: 535 IPGANNIGNGTYLEDGLASMGRGQDESKLIAFFGRINYSYKGKYLFNASVRREGSTRFGE 594

Query: 590 SNRWGYFPSVGFTWRIIGENFLKDSKVLSDLKLRLSYGETGNKDGADIGNYNYIAKYYAS 649
           +++WG+FP+V   WRI+ ENF  D+  LS+LKLR+ +G TGN+   DI  Y  IAKY   
Sbjct: 595 NHKWGWFPAVSAGWRILEENFFSDATPLSNLKLRVGFGITGNQ---DIPLYASIAKY--- 648

Query: 650 SNTGQYQIGNTFYNYYAP-AGYDPDLRWETTTTYNAGLDYGFLGGRLYGSIDVYYKKTAD 708
           ++ G       +   Y P +  +PDL+WE    YNAG+D+G    RL  S+D YY+KT D
Sbjct: 649 NDLGYAYYNGKWDKVYGPVSNPNPDLKWEKNAEYNAGVDFGIWNDRLTASVDYYYRKTTD 708

Query: 709 LLSKITIPVGTNFSNELVTNVGNMDVKGAEVSLNFTAVKTENTTWDFGVNASYNKRKVTN 768
           LL      + +N  + + TNVG +  +G E ++ +  ++ +   W      SYN+ K+ +
Sbjct: 709 LLDWYDAQMPSNIYSTIFTNVGTLTNQGIEFAIGYDVIRNKELKWHLDGGFSYNENKLVS 768

Query: 769 LTLNPNSGFKIDAGDISGGTGIHLKYNAVNQIP--QSYFVYKQVYDAGGKPL-------- 818
           L    NS ++ +          H+ YN ++     Q+ ++ ++     GKP+        
Sbjct: 769 LA---NSSYRAN----------HITYNPLSSPANGQTTYILEE-----GKPIGTYYGLKY 810

Query: 819 -------EGVYQDLNGDGTITTDDQYFYKSPDPQFTFGFNTSFTYKKWSVNTVLRASLGN 871
                  + V++D + DG  +  D  +  +  P++ F   ++ T+K +  +  LR + G 
Sbjct: 811 RGFNSAGKWVFEDRDEDGAYSDKDYTYLGNGLPKWYFNLASTLTWKDFDFSFQLRGAAGF 870

Query: 872 YVYDNVSSNFGIKSNLLSSVGILNNASSDILNTGFTNTQYLSDYYIKNASFLKMDNLGLA 931
            V +     +       +SV +  N     L     +    SDYY++  ++LK+DN+ + 
Sbjct: 871 KVLNTKRIYYE------NSVSLPFNLLKSALGRPLNDAATFSDYYLEKGNYLKLDNITVG 924

Query: 932 YNIGKLSKDGTATMRISANCQNVFVVTKYKGLDPELATGI-----DYNLYPRPRTYTLGL 986
           Y          +  RI A   N+  +T Y G+DPE+ TG+     D   YPR  T  LGL
Sbjct: 925 YTFDLSQLKYVSNARIYATATNLLTITGYTGVDPEVGTGLTPGFDDSGYYPRSTTLMLGL 984

Query: 987 NVGF 990
           N+ F
Sbjct: 985 NIKF 988