Pairwise Alignments

Query, 990 a.a., SusC/RagA family protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1119 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  379 bits (974), Expect = e-109
 Identities = 309/1044 (29%), Positives = 489/1044 (46%), Gaps = 118/1044 (11%)

Query: 29   VSGKVLDETGLPLPGASVVVKGTTRSTSTDANGNYKLGGLSDGSITLSASFVGYQTLDKA 88
            ++G V D  G P+ G ++  KGTT  T +D N  + L  +S G++ L  S++GYQ L+  
Sbjct: 112  ITGVVNDVNGEPIIGVTIKEKGTTNGTVSDINAKFTLE-VSPGAV-LELSYIGYQPLE-- 167

Query: 89   VSISANATVNFQLVPDAQKLNEVVVIGYGTAEKKNLTGSITTVSAKDFQKGAITTPEQLI 148
            V +     ++  L    + L+EVVV+GYGT +K +L  SI +V ++   K A     +++
Sbjct: 168  VKVGNQTDLSIVLYEKQELLDEVVVVGYGTMKKSDLNASIVSVKSEKLNKAASPNFSEML 227

Query: 149  QGKVAGVNIISNSGQPGVGSQIRIRGGASLNASNDPLVVIDGVPF--------SGNT-ID 199
             G+ AG+ +   S QPG G ++ IRG AS  A NDPL V+DG P         SGN    
Sbjct: 228  MGRAAGLTVKQGSAQPGGGIEVLIRGAASTGAGNDPLYVVDGFPIVNAGVNPGSGNQWTA 287

Query: 200  NAPSPLSLINPNDIETFTVLKDANATAIYGSRASNGVILITTKKGGSGAPVINFSTNNSI 259
             + SPLS INPNDIE+  +LKDA+ATAIYG+R +NGV+LITTK+G     V  ++ N S 
Sbjct: 288  GSNSPLSSINPNDIESIEILKDASATAIYGARGANGVVLITTKRGTQDTKV-EYNMNMSF 346

Query: 260  ATVARKVDVLSADQ------------------VRAYVNANGNAT---------QKALLGT 292
             T+ ++ ++L+A +                  V  Y N +  A          ++     
Sbjct: 347  QTINKRPELLTAGELMTTQNSYYKEQYLMQNLVYPYGNTDPGAVSPYVPMYTDEEIAKAG 406

Query: 293  ANTDWQDAIYQRAFTSDNNLSIAGSFKGVPYRVSAGYLDQDGLLITDKLKRGTGSITLSP 352
              T+W D I +      +NL++    + +   +S  Y DQ G++ T   KR +    L  
Sbjct: 407  KGTNWYDMITRTGLIQQHNLTVTYGNEKMRSLISLNYFDQKGVVKTSGYKRYSFRYNLDH 466

Query: 353  RLFK---------DHLKIDLNLKGSLTDSHFANAGAINSAIQFDPTQPIYADNKYGNYFE 403
            ++ K             +D N   +L   + + AG I SA+ + PT     D   G   +
Sbjct: 467  KITKWWDYGISATASYVVDQN--ATLGGGYDSTAGIIESALSYSPTVKAERDPTTG---K 521

Query: 404  WTQGTGSAMVPNPNAPRNPVALIRLQDNNGNAARSVGNAKFDYSFHFLPE-LHANLNLGY 462
            W +    A++       +P++ + ++D      R +  A  +  F+F+ + L   L+ G 
Sbjct: 522  WMEDPKQALL------NHPLSYLDIEDET-KTKRFLATAFTN--FYFIKDVLWLKLSAGA 572

Query: 463  DVSKGYGSIAVPTYAAQSAATSGSFSRALKTEADKFSEFYLNYAHTVESIKSRFDVTAGY 522
            D+  G      P      ++ +G  +       D  ++   N+  T    K R  + A  
Sbjct: 573  DIRDGSRHSYYPMTTKYGSSVNGDANINSANREDYVADMVFNFQKT---FKERHKLLALL 629

Query: 523  GY-YDIATTGYNFTNYTG----------LGVPIVTPVFPFSVERNKMLSYYGRFNYTLAD 571
            GY Y +      +    G          L      PV      ++ + SY+GR  Y+  D
Sbjct: 630  GYSYQVQNDDGAYARAMGFMSDALMYYKLQAGETRPVVSSYKNKHVLASYFGRAQYSFKD 689

Query: 572  KYILSATMRADASSKFAESNRWGYFPSVGFTWRIIGENFLKDSKVLSDLKLRLSYGETGN 631
            KY+ + T R D S +F ++NR+ +FPS  F WR+  E+FLKD   LSD KLR+S G+ GN
Sbjct: 690  KYLFTFTARIDGSDRFGKNNRYAFFPSGAFAWRMNQEDFLKDVNWLSDAKLRVSMGQVGN 749

Query: 632  KDGADIGNYNYIAKYYASSNTGQYQIGNTFYNYYAPAGY-DPDLRWETTTTYNAGLDYGF 690
            ++       N  A  Y + +   Y +G+T         + +PDL+WETTT  N GLD+GF
Sbjct: 750  ENLP-----NDAASEYFAFDGRNYYLGDTEKRGVNLGKFGNPDLKWETTTEVNFGLDFGF 804

Query: 691  LGGRLYGSIDVYYKKTADLLSKITIPVGTNFSNELVTNVGNMDVKGAEVSLNFTAVKTEN 750
               R+ GS+DV++K+  DLLS  ++P  T  +  + +N+G     G E++LN   V  E 
Sbjct: 805  FRNRINGSVDVFFKEVKDLLSWRSLP-HTAVTTGIWSNIGKTKSTGFELTLN--TVNLEG 861

Query: 751  TT-WDFGVN-ASYN---KRKVTNLTLNP--NSGFKIDAGDISGGTGIHLKYNAVNQIPQS 803
               W+  +   SY    K +   + L P       + A       GI         +P  
Sbjct: 862  PLHWESTLTYTSYRDRWKERDPKVILAPYVKENDPVSAIYTLIPDGIKQAGEDTPAMPDL 921

Query: 804  YFVYKQVYDAGGKPLEGVYQDLNG--DGTITTDDQYFYKSPDPQFTFGFNTSFTYKKWSV 861
                ++  D  G   EG   +L G  DG I   D  +  +  P+FT GF+  F YK + +
Sbjct: 922  LPGQRKYKDVNGLDEEG---NLTGKPDGKIDQADVVYLGTRAPKFTMGFSNDFRYKGFDL 978

Query: 862  NTVLRASLGNYVYDNVSSNFGI-KSNLLSSVGILNNASSDILN------------TGFTN 908
            N  L AS+G Y Y       G+   N +  +   NN  +DI N            +G  N
Sbjct: 979  NIYLYASVGGYSYPYTQVEHGVYGGNGIQRLKDNNNFLADIKNRWTSDNMSSAMPSGEVN 1038

Query: 909  T--QYLSDYYIKNASFLKMDNLGLAYNIGKLSKDGTATMRISANCQNVFVVTKYKGLDPE 966
            +   Y +  + KN ++L++ ++ L Y++ +L K     +R   + QN+   T YKGLDPE
Sbjct: 1039 SYDSYGAPNWEKN-TYLRLKSVTLGYDLSRLFKADKLKVRFYFSGQNLLTFTGYKGLDPE 1097

Query: 967  LATGIDYNLYPRPRTYTLGLNVGF 990
            +    D   YP+ +T++ GL+V F
Sbjct: 1098 VEN--DRASYPQQKTFSFGLDVKF 1119