Pairwise Alignments

Query, 1083 a.a., TonB-dependent receptor from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1090 a.a., OmpA-related protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  523 bits (1348), Expect = e-152
 Identities = 356/1126 (31%), Positives = 558/1126 (49%), Gaps = 92/1126 (8%)

Query: 7    FLVSTLMLLFAFAQAQVTTSSINGKIKDEKGTIPGATIVMVHVPTGTVSKGLSNENGLYR 66
            FLV  ++L+ A   AQVTT+S++GK+  +   I GATIV +H P+GT    ++N +G + 
Sbjct: 8    FLVVVMLLITATMSAQVTTASMSGKVTAQDEPIIGATIVAIHEPSGTRYGTVTNVSGQFN 67

Query: 67   IGNLNPGGPYKITVTFVGYSPVVKENIYLTLGSDVRFDLDLHEQGNQLAEVSVKGQKGGT 126
            +  +  GGPYK+ +T+VGY   + + I L+LG +   ++ L E    L EV V   K   
Sbjct: 68   LQGMRTGGPYKVEITYVGYQSAIYKGIQLSLGENYVLNVSLKESSELLDEVVVTAPKTIE 127

Query: 127  KAGAGTSIGEGQIKTLPTMNRSLQDVTRVTPQGSKDNTFGGTNFRYNNVTIDGAINNDAI 186
            K G  T++ E Q+ TLPT+NRS+ D T+++P     ++F G + RYNN+TIDGA  N++ 
Sbjct: 128  KIGTVTNVSERQMNTLPTINRSITDFTKLSPYAGGSSSFAGRDGRYNNITIDGASFNNSF 187

Query: 187  GFSPSLGGQSGSSGMPGSSTRTNPVSLDAIQDVTVLLSPYDVKVGNFLGGSINAVTRGGT 246
            G S        S+ +PG  ++  P+SLDAI ++TV +SPYDVK  NF G SINAVT+ GT
Sbjct: 188  GLS--------SNNLPGGDSQ--PISLDAIDEITVNVSPYDVKYSNFTGASINAVTKSGT 237

Query: 247  NEVVGSVYGYGRNASLIGRNKIGDNSKEPSAFHDYQTGFRVGFPIIKDKLFFFTNEEITR 306
            N   G+ Y Y +     G +  G++  +   ++ +  G   G PIIK+KLFFF N EI  
Sbjct: 238  NSFSGTAYTYHKPRGFAGSSIDGEDILKAKEYNSHSYGVTFGGPIIKNKLFFFLNAEIEN 297

Query: 307  RQDPVIL--------GAGSSDMKL--LTLSEAQQISDRMKNAYGIDAGSFGDYNIYSQSN 356
            ++ P +         G G S  ++    + + + ISD +K  Y  D G + ++N +   N
Sbjct: 298  KETPGVTWLPNQDQNGTGDSGKRISRTWVGDMRTISDFVKTKYDYDPGQYENFNNFQSDN 357

Query: 357  -KFFNRLDWNINENNQLTIRNNTIIS--------KATNLERDQSN------FRFGGIDFR 401
             K   R+DWNI++N++LT+R N++ S        K+T +    SN      F FG  +++
Sbjct: 358  WKLMARIDWNIHQNHKLTVRFNSVSSEDDREVSAKSTIITSTNSNRYGLDAFSFGNSNYK 417

Query: 402  QNNNQTSTVADLKTRFGNSATNNLIIGYSTVHDFRDPLSNPALPQIEIASNGGT-LFLGT 460
              N  TS   +L +RF N+  N L+  Y+ + D R+   +   P ++I  +G   + LGT
Sbjct: 418  MKNVVTSITGELNSRFSNNVQNKLLATYTHISDTREQKGSD-FPFVDIYKDGKQYITLGT 476

Query: 461  DREASIFNMKQNTFEFTDNYTFSKGNHTFTFGTHNEFYNINYGFVNSWNGRVAYSSIADF 520
            +       +  N F   DN + S G H    G   E       ++    G   Y S+ DF
Sbjct: 477  EVFTPNNQVINNVFSLVDNVSISLGKHELLAGVSFERQYFKNSYLRGPYGYYRYDSMDDF 536

Query: 521  LANQ-PNRVRASYNYDDNSRDNILANPTAQFNVNMYSVYGQDEIRVGDRLKLTPGLRFDM 579
            +  + P     +Y Y+ N        P ++    M  VY QD   +    +LT GLR DM
Sbjct: 537  MQGKVPTIYGITYGYNGNDA------PGSELTFGMAGVYAQDVWSLTPNFRLTYGLRLDM 590

Query: 580  ANLPDMPSLSTKTTNSPVDKNYGTTYTYTQPSSITGKFLNKIQISPRLGFNFDALGNQRL 639
                    +++  +N  +++      T+   S        ++  SPR+GFN+D  G++ +
Sbjct: 591  PIY-----MNSLDSNKSIEELAFVNNTHVDISKWP---KTQVLFSPRVGFNWDVKGDRSV 642

Query: 640  IVRGGTGLFTSRVPFAWIGYAYYNNGVNYGAFDKSYVYVNTDPTKIVTPAPGSDPVKDAL 699
            IV GGTG+FT  +PF W    + N   N G +     Y NT         PGS P     
Sbjct: 643  IVSGGTGIFTGLLPFVW----FTNQPSNSGLYQNMVEY-NTQKN------PGSLPADFGF 691

Query: 700  TGNGEAGYVTKQGV--NVKDANGATQVDLVDNNFKMPKAWRSNLAFDYKTDDQWKFTIEG 757
              N          +  +         +  VD  FKMP+ WRSNL  D +    +  ++  
Sbjct: 692  NPNYRETLQKYPSLFPSTPSEQAPDVIAYVDPKFKMPQVWRSNLNVDIQLPYDFMLSVGA 751

Query: 758  IFSQVIKDVQFQQINYVDNPTYMAYDTQKQQPIYSGTKIN-PLYTN-----AYLLSNTDK 811
            ++++ I +V   QIN  +      Y+ Q  +  ++  K     YTN       L +  DK
Sbjct: 752  MYTRDIYNV--AQINMNEAEPTGVYNEQPDRIYWASKKYEYNDYTNGKNVVVKLSNGEDK 809

Query: 812  GYKYSLTAQVSKSLPIGLDMMVAYTYGRSKDIANGIRNSMESNWQLNQALNP-NMPALAY 870
            GY+YS  A ++K    G    + YTY  +KD+     ++  S WQ N A+N  N P ++Y
Sbjct: 810  GYQYSFNAILTKKYDFGFTGSIGYTYTMAKDLTANPGSAPNSAWQNNVAVNSLNDPGVSY 869

Query: 871  SNFDIRNRIISTINYRLDWAKNGKYVSNFSLFFSGQSGSPYSLGLVNTRINGTGQTVSLL 930
            S F   +RII+  +Y +++AK  K  + FSLF+SG     YS    N  +NG G    L+
Sbjct: 870  SLFSTPHRIIANASYEINYAKCLK--TTFSLFYSGYHTGRYSYTYYND-MNGDGNYSDLI 926

Query: 931  YIP-------AVGETQKFFANNATGIAQAAAFDDYINNDKYLSTRRGDFTERNGARTPWN 983
            Y+P        V  T K  A   + + QA  F D++NND YL  R+G + ERNG+ TPW 
Sbjct: 927  YVPNSQDEMTFVDITDKSGAITYSAVDQAKDFWDFVNNDSYLKDRKGKYVERNGSLTPWI 986

Query: 984  VQADFRFAQDIQVAKGKHPHVLTLTYDIINLTNLVNKDWG-IQYFSPNTYNSMASVGIKV 1042
             + DF+ AQD     G   + + ++ D++N+ N++N  WG  Q     +Y+++  +    
Sbjct: 987  NRFDFKIAQDFYATLGGRKYGIQVSLDMLNVGNMINSKWGAYQSCGLKSYDNVQLLK-TA 1045

Query: 1043 STAGTPSTYPV-----YTFAQKDVTSYSKDFFASRYQMQLGLRYSF 1083
            S  G P TY +       F ++    Y+ +   S + MQLG++ +F
Sbjct: 1046 SKVGEPLTYQINANSREAFKERSSWQYT-NTIGSAWSMQLGVKVTF 1090