Pairwise Alignments

Query, 1233 a.a., methionine synthase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1240 a.a., B12-dependent methionine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 1511 bits (3913), Expect = 0.0
 Identities = 756/1240 (60%), Positives = 950/1240 (76%), Gaps = 27/1240 (2%)

Query: 3    IREELEKRILVIDGAMGTMIQRYTLTEEDFRGERFKNHPCDVKGNNDLLNITRPDIIKTI 62
            IR  L K IL++DGAMGTMIQ + L E DFRGERFK  PCD+KGNNDLL +T+P++IK I
Sbjct: 17   IRARLNKEILILDGAMGTMIQNHKLEEADFRGERFKQWPCDLKGNNDLLVLTQPELIKQI 76

Query: 63   HLEYLASGADIIETNTFSTQRISMADYQMEDLSYEMSFEGARVAKEAVNEFMAANPDRKC 122
            H +YL +GADIIETNTF+  +++MADY+M++LS E++ EGAR+A+ A +E +AA   R+C
Sbjct: 77   HRDYLLAGADIIETNTFNATQVAMADYEMQELSREINLEGARLARTACDE-VAAESGRQC 135

Query: 123  FVAGAIGPTNRTLSMSPNVNDPGFRAVYFDELEAAYYEQVRGLVDGGSDVLLIETIFDTL 182
            +VAG +GPTNRT S+SP+VNDPG+R ++FD+L  AY E  + L++GG+D++++ETIFDTL
Sbjct: 136  YVAGVLGPTNRTCSISPDVNDPGYRNIHFDDLVEAYIESTQALIEGGADIIMVETIFDTL 195

Query: 183  NAKVAIVAIKKYEEVIGRKLEIMISGTITDASGRTLSGQTAEAFLNSVMHAKPLSIGFNC 242
            NAK A+ AI+   + +G++L +MISGTITDASGRTL+GQT EAF NS+ H KPLSIG NC
Sbjct: 196  NAKAALFAIETLFDQLGQRLPVMISGTITDASGRTLTGQTTEAFYNSLRHVKPLSIGLNC 255

Query: 243  ALGAKEMRPHIEELAAKAGCYVSAYPNAGLPNEFGAYDEQPHETAHLVDDFIASGFVNIV 302
            ALG +E+RP++EEL+  A CYVSA+PNAGLPNEFG YDE P + A ++  +   G +NI+
Sbjct: 256  ALGPQELRPYVEELSKIAECYVSAHPNAGLPNEFGGYDETPEQMAEVIGPWAEEGLLNII 315

Query: 303  GGCCGTTPEHIGCIAKNARKAEPRKIPVLEPYMRLSGLEPVTITPESIFVNIGERTNITG 362
            GGCCGTTP+HI  I     K   R++P L    RLSGLEP+TI  +S+FVN+GERTN+TG
Sbjct: 316  GGCCGTTPDHIKAIRAAVIKHGARELPDLPVACRLSGLEPLTIDADSLFVNVGERTNVTG 375

Query: 363  SPKFSKLILGGDYEAALAVALQQVEGGAQVIDVNMDEGMLDSEAAMTKFLNLIASEPDIA 422
            S KF +LI  G+YE AL+VA  QVE GAQ+ID+NMDEGMLD    M KFLNLIASEPDI+
Sbjct: 376  SAKFLRLIKTGEYEEALSVARDQVENGAQIIDINMDEGMLDGVEVMQKFLNLIASEPDIS 435

Query: 423  KLPIMVDSSKWSVIENGLKCLQGKGIVNSISLKEGEDKFRESARKIMQYGAAVVVMAFDE 482
            ++PIM+DSSKW VIE GLKC+QGKG+VNSISLKEGE KF E A  + +YGAA ++MAFDE
Sbjct: 436  RVPIMIDSSKWEVIEAGLKCIQGKGVVNSISLKEGEAKFIEQATLVKRYGAAAIIMAFDE 495

Query: 483  QGQADNYERRKEICKRSYDILVNEIGFPAEDIIFDPNILTVATGLEEHNNYAVDFINATR 542
             GQAD   R+ EIC R+Y +LV+++GFP EDIIFDPNI  +ATG++EH+NYAVDFI ATR
Sbjct: 496  VGQADTMARKIEICTRAYRVLVDKVGFPPEDIIFDPNIFAIATGIDEHDNYAVDFIEATR 555

Query: 543  WIKENLPHAKVSGGVSNISFSFRGNNTVREAMHSAFLYHAIQAGLDMGIVNAGMLEVYQE 602
             IK  LPHA +SGGVSN+SFSFRGNN VREA+H+ FLYHAIQAG+DMGIVNAG L +Y +
Sbjct: 556  EIKRTLPHAMISGGVSNVSFSFRGNNPVREAIHAVFLYHAIQAGMDMGIVNAGQLAIYDD 615

Query: 603  IPPELLERVEDVLLN-----RRDDATERLVEYADTVKSKGKEVVKDE--EWRKGSVEERL 655
            I P+L  RVE V+ N     +  + TE+L+E A+  +  G    K E  EWR   V +RL
Sbjct: 616  IDPDLKARVEAVVQNLPCPVQGSNNTEQLLEIAEQYRGDGAAGAKKEDLEWRSWPVNKRL 675

Query: 656  SHSLVKGIVEYLDDDVEEARQKYARPIQVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSAR 715
             H+LVKGI E++D D EEARQ  +RP+ VIEGPLMDGMN+VGDLFG+GKMFLPQVVKSAR
Sbjct: 676  EHALVKGITEFIDQDTEEARQLASRPLDVIEGPLMDGMNVVGDLFGSGKMFLPQVVKSAR 735

Query: 716  VMKKAVAYLLPFIEQEKLDNPDQDQNSSAGRVLMATVKGDVHDIGKNIVGVVLACNNFEI 775
            VMKKAVAYL P+IE EK+      +  S G++LM TVKGDVHDIGKNIVGVVLACN +E+
Sbjct: 736  VMKKAVAYLNPYIEAEKV------EGESNGKILMVTVKGDVHDIGKNIVGVVLACNGYEV 789

Query: 776  VDMGVMVPAQEIIKKAKEINADIIGLSGLITPSLDEMVHFAKEMEREGFTIPLIIGGATT 835
            VD+GVMVP ++II+ AK    DIIG+SGLITPSLDEMVH  K   + G  IP IIGGAT 
Sbjct: 790  VDLGVMVPVEKIIEVAKAEKVDIIGMSGLITPSLDEMVHNVKAFHKAGLNIPSIIGGATC 849

Query: 836  SRIHAAVKVAPNYSGPAIHVLDASRSVTVCSTLMNPETKDEYVAGIRAEYDKAREAHLNK 895
            S+IH AVK+AP+    AI++ DASR+V + + L+N ET+   +     EY   R+   ++
Sbjct: 850  SKIHTAVKIAPHAPEGAIYIADASRAVPMVAKLINKETRQATIDAAYEEYRVMRDKRNSQ 909

Query: 896  RSDKRFKTLEEARENRFKIDFQPNLP-VPEFTGTRVFDNYPLEELVPYIDWTPFFHTWEL 954
               K+  +LE ARENR + D+  + P VP   G +VFD+YPLE+LV  IDWTPFF +WEL
Sbjct: 910  AKRKQIVSLEAARENRCQQDWNAHTPFVPNQLGRQVFDDYPLEDLVDRIDWTPFFRSWEL 969

Query: 955  RGSYPKIFDDKNVGDEAKKLFDDAQTLLKRILDEKLLTARAVIGFWPANTVG-DDIQLTV 1013
             G +PKI DD+ VG+EA+KL+ DA+ +LK I+DEK LTA+AVIG +PANTV  DDI++  
Sbjct: 970  HGHFPKILDDEVVGEEARKLYQDAKAMLKTIIDEKWLTAKAVIGLFPANTVNYDDIEIYT 1029

Query: 1014 DSSQLSNDSKLKTENSQLVTIHTLRQQAEKVDGQPYYALSDFIAPKESGIQDYFGGFAVT 1073
            D S+    SK++      +T H LR Q E+V G   + L+DF+APK+SG+ DY GGFAVT
Sbjct: 1030 DESR----SKVE------MTTHHLRMQIERV-GNDNFCLADFVAPKDSGVADYMGGFAVT 1078

Query: 1074 AGIGIDELVNEFESNYDDYNSIMAKALADRLAEAFAERMHERVRKEYWGYAQDENLSNQE 1133
            AG GIDE V  FE+N+DDY++IM K LADRL EAFAERMHERVRKE+WGYA DENL N+ 
Sbjct: 1079 AGHGIDEHVARFEANHDDYSAIMLKCLADRLVEAFAERMHERVRKEFWGYAADENLDNEA 1138

Query: 1134 LIKEEYAGIRPAPGYPACPEHTEKGTLFQLLDAENKIGLHLTESYAMYPTAAVSGFYFAH 1193
            LI+E+Y GIRPAPGYPACP+HTEKG L++LL  +  I L +TESYAM+PTAAVSG+YFAH
Sbjct: 1139 LIREKYKGIRPAPGYPACPDHTEKGLLWELLKPDETIDLKITESYAMFPTAAVSGWYFAH 1198

Query: 1194 PDSRYFGLGKITKDQIEDYAIRKNMPVEEVERWLSPNLAY 1233
            P SRYFG+  I +DQ+EDYA RK M VEE ERWL+P L Y
Sbjct: 1199 PQSRYFGVTNIGRDQVEDYAKRKGMSVEETERWLAPVLDY 1238