Pairwise Alignments

Query, 583 a.a., ABC transporter ATP-binding protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 599 a.a., lipid A export ATP-binding/permease protein MsbA from Phaeobacter inhibens DSM 17395

 Score =  229 bits (585), Expect = 2e-64
 Identities = 166/593 (27%), Positives = 302/593 (50%), Gaps = 42/593 (7%)

Query: 1   MGLLLNYLKHHKWIVALALLLAGINIGFSLLDPYITGRILDRFINKKDSLTYNQYLWGSL 60
           +  L  +++ ++ ++A+A L   +  G SL  P    R++D F   + +L  NQY   +L
Sbjct: 23  LSALWPFMRPYRVLMAMATLALVLTAGLSLTLPLAVRRVVDNFRISEAALL-NQYFAAAL 81

Query: 61  GLIGL-AIGAAMVSRIAKNFQDYFTSVIVQKVGAKMYAD----GLQHSLKLPYQIFEDQR 115
            +  L A+G  +               +V ++G ++ AD         + +    FE   
Sbjct: 82  VIAALLAVGTGL------------RYALVTRLGERVVADIRKAVFDRVIGMSPAFFEQIM 129

Query: 116 SGETLGILQKVRLDSEKFITSFISILFVSLIGMIFVIVYSVSVSYKVTLVYFSAIPIISF 175
           +GE L  +       +  + S +SI   +++  I  +V  +  S K+T +    +P +  
Sbjct: 130 TGEVLSRITTDTTLIQSVLGSSVSIALRNMLIFIGGLVLMLLTSAKLTSLVLLIVPAVIV 189

Query: 176 VSWFLSRKIKTIQRSIVGETTALAGSTTESLRNIELVKSLG---LADQEIDRLNKTTYKI 232
               L R+++ I R       A +G+  E+L  ++ V++      +  E  RL +T + +
Sbjct: 190 PILVLGRRLRKISRENQDWIAASSGNAGEALGAVQTVQAYTHEVASRSEFSRLTETAFDV 249

Query: 233 LGLELKKVKYVRSMSFVQGTTVNLVRSTMVLVLLLLIFD---NTISAGQYFSFLFYSFFL 289
                  ++ +++ +F+    + LV S +V VL +   D     +S G    F+ Y+  +
Sbjct: 250 ------SMRRIQTRAFLTVIVIFLVFSGVVGVLWMGANDVRAGIMSEGTLVQFVIYAVLV 303

Query: 290 FGPLQELGNVILTWREAEVSLGNFKKI--LSTPVDK--KPENPTSIAKIK--DLTFNNVG 343
            G +  L  +   W E + + G  +++  L T VD+   P  P ++A     ++ F++V 
Sbjct: 304 AGSVAALSEI---WSELQRAAGATERLVELLTAVDQVQDPYAPRALAAPVRGEIRFDDVS 360

Query: 344 FKHLTANR-NALDNISFKTHHGQTIAFVGPSGSGKSTLVKLLVGLYPAKDGEILYNGIPS 402
           F++    +  AL ++S     G+T+AFVGPSG+GK+T+++++   Y    G +  +G P 
Sbjct: 361 FRYPARPQIPALVDVSLTVQPGETVAFVGPSGAGKTTIIQMIQRFYDPTSGAVCLDGRPL 420

Query: 403 NDIDLDALREKIGFVTQDTQLFSGTIRENLLFVNPNATDEECYKVLNQAACQTLLARADK 462
            D+  D  R+ I  V QD  +F+ + R+N+ F  P A+D E       AA    ++   +
Sbjct: 421 RDLQRDDFRQHIALVPQDPVIFALSARDNIRFGRPGASDAEVEAAARAAAAHDFISALPE 480

Query: 463 GLDSLIGEGGVKVSGGEKQRLSIARALLRQPDILVFDEATSSLDSITEEEITKTIRSVSD 522
           G DS +GE GV +SGG+KQR++IARA+LR   +L+ DEATS+LD+ +E  +   +  +S 
Sbjct: 481 GYDSQVGERGVMLSGGQKQRIAIARAILRDAPVLLLDEATSALDAESERLVQAAVDELSQ 540

Query: 523 LTDHITILIAHRLSTIKHADKIYVLEKGNIIEEGRHEELIAQNGLYQAMWRQQ 575
                T+++AHRL+T+K AD+I V+E+G II  G H++L+A++GLY  + R Q
Sbjct: 541 --GRTTLIVAHRLATVKKADRIVVMEEGRIIATGTHDQLVAEDGLYARLARLQ 591