Pairwise Alignments

Query, 183 a.a., RNA polymerase sigma factor from Pedobacter sp. GW460-11-11-14-LB5

Subject, 193 a.a., RNA polymerase sigma factor (sigma-70 family) from Paraburkholderia graminis OAS925

 Score =  130 bits (327), Expect = 1e-35
 Identities = 81/187 (43%), Positives = 111/187 (59%), Gaps = 10/187 (5%)

Query: 2   PTNEPQ-----NIISTVANYGKRLFSFIRGRVNTDEDAEDILQDVWFQLSNQPEAGA-IE 55
           PT++P      +I +TV     RL +FIR R+   +DAEDILQDV+ +        A IE
Sbjct: 5   PTSQPMTDRDSDITATVVRERTRLVNFIRRRIRDPDDAEDILQDVFHEFVQAYRLPAPIE 64

Query: 56  QISGWLYRVARNKITDKYRKQKEESLEDFTFEGED---GEINFKEILLAEAYSPEEESLK 112
           Q S WL+R ARN+I D++RK++E+ L D  FE +D    E      L A    PE    +
Sbjct: 65  QASAWLFRAARNRIIDRFRKKREQPLTD-PFETDDDAGSEYRLDLALPAHDAGPEALYAR 123

Query: 113 KLFWDQLFLALEELPENQRYVFVQNELEERTFQELADESGENIKTLISRKGYAVKHLRNR 172
            L    L  AL+ELP NQR VF+ +ELE R+F+++  +SG  + TL++RK YAV HLR R
Sbjct: 124 ALLLKALQDALDELPPNQRDVFIAHELEGRSFKDMVAQSGVPLNTLLARKRYAVLHLRAR 183

Query: 173 LQNLYQE 179
           LQ +Y E
Sbjct: 184 LQVIYDE 190