Pairwise Alignments

Query, 1028 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1071 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  212 bits (539), Expect = 1e-58
 Identities = 269/1102 (24%), Positives = 455/1102 (41%), Gaps = 187/1102 (16%)

Query: 13   RVLLLLLCLYLGLSAYAQTPSVKGVIKDAK-ETIVGATVIAQNVQTGIKTTTSSDKNGVF 71
            R LLL++   L LS  AQT ++ G +KD   E I+GA+++ +   T   T T  D N   
Sbjct: 9    RTLLLMIFAALSLSVSAQTITLNGNVKDTTGEPIIGASIVEKGNTTN-GTITDLDGNFSL 67

Query: 72   SFPRLAAGPYKFTINFIGYETKTVTGEVRDGGTFSLSVVLKESSTSLDKDVIVTGTGITR 131
              P  A       I++IG +T+    E+   G   + V L + + +LD +V+V G G  +
Sbjct: 68   KVPANAT----VVISYIGMKTQ----EIAIKGKSKIDVTLSDDAKALD-EVVVIGYGTAK 118

Query: 132  NKNSFTGVTATFSGETLKSIGNNNIIQSLRTLDPSFILMENNLAGANPNVLPVIEVRGKT 191
             K+  TG  AT + E L  +    +  +   L      ++      +P+    I VRG  
Sbjct: 119  RKD-ITGSVATVNAEALTVVP---VASATEALTGKMAGVQITTTEGSPDAEMKIRVRGGG 174

Query: 192  SVPTATLKDQFGTDPNQPLFILDGFETTLQNIVDLDMNRVASVTILKDAASTALYGARAS 251
            S+          T  N PLFI+DGF   +++I D+  + +  +T+LKDA+STA+YG+R +
Sbjct: 175  SI----------TGDNTPLFIVDGFP--VESISDIPASDIEDMTVLKDASSTAIYGSRGA 222

Query: 252  NGVVVVETIRPKAGQLQFTYSNDFRVESPDLSGYNMMNAAE--KLQFEKL---AGRY--- 303
            NGV++V T   K G++   Y N +          N +++ +  K Q+E     +G++   
Sbjct: 223  NGVILVTTKSGKEGKISVNY-NAYYSWKKMAKQLNTLSSGDYAKWQYELAMLNSGKHDTI 281

Query: 304  ---NYFVSNATYQQIGL-DQIYNNHLAAVKRGVDTYWLNEPV-QTGITENNSIYAQGGDQ 358
               +Y      YQ I L + I  N+           W ++   +TG T N+++   GG  
Sbjct: 282  NPDDYTKVFGNYQDIDLYENIEGNN-----------WQDQVFGRTGHTFNHNLSINGGSD 330

Query: 359  AFTYGVGLNYKTQSGAMKGSG--RDTWSGNIN----------LTYRKGKFNINNILYVRG 406
               +     +      M+ S   RD  S  +N           + R     IN       
Sbjct: 331  KTKFAFSYAHMDDKAIMQDSDFKRDNLSLKVNHKPNKRVALDFSVRYSNTTINGAGANES 390

Query: 407  YSSTDSPYGSFSNFVNANPYYIKDPSQRYLEVSNTSTYSELKVRNPLYDASLPNTSTAEN 466
             S   S      + +   P+  KD S  Y          +L++ NPL        S A+N
Sbjct: 391  KSEVSSADSRMKDVMIYTPFNFKDLSDGY--------DPDLQLTNPL-------VSVADN 435

Query: 467  LEVQNNFQLNYDISSDLQIRGGLQL---------------VKGSVTAVSFLAPENSVFEE 511
               Q+    NY+ S   +    L+                  G  T  S +   N     
Sbjct: 436  ARQQSRQTFNYNGSFTWEFIDNLKFKTEFGLDHYYNKDKRFYGVTTYNSRINGNNQPIAV 495

Query: 512  VGALQRGKYTNSKTDNFSYQGNMLLTYGKVFGGK-HSVTANARAEI----NNRDFRAVGF 566
              + +R  + N+ T N+ ++        K+   K HS++     E+    +N D   V F
Sbjct: 496  FTSKERKTFRNTNTLNYDFK--------KILKNKDHSLSLLVGQELIKVKSNTDTDEVRF 547

Query: 567  VAEGFPEGSTGNPRFAYSYQSNAAPTASSSVYRTANATLS----ANYAYDMRYLFDFSYR 622
                +P+  T +  F  S Q  A  T     Y   +  LS    ANY +  +YL   ++R
Sbjct: 548  ----YPKLFTADQAFNLSSQGTAFST--DKFYNADDILLSYFARANYDFQGKYLASATFR 601

Query: 623  LDGSTAFGKNKQFSPYWSSGIGWNLNREHFFANTR-WINRLKLYANIGVTGNQNYGNITS 681
             DGS+ F K+ ++  + S+ + W ++ E+F  +T+ W++ LKL  + G  GN N  +  +
Sbjct: 602  ADGSSKFSKDNRWGFFPSAALAWRMSSENFMESTKSWLDDLKLRISYGTAGNNNIPSDQT 661

Query: 682  VSVYNFNSSTNY----NQFGQGVSLATLGNPDLKPQKTTQISAGLDYSLFNDRLFGYVSV 737
             ++++  S  +     N      + A + NPDLK + T   +AGLD++L N +L G V  
Sbjct: 662  STIWSAGSGASIGWMNNMSSYWTTGAQMANPDLKWETTHTRNAGLDFTLLNGKLSGTVEY 721

Query: 738  YNKRTDPLVVAVDLPSSTGVFNYPLNVGILNNKGMEFKLNYAPIYNIEKRIVWVVGASGN 797
            Y   T  L++   +      F Y  N+G   NKG E  LN+  I   +K       A+  
Sbjct: 722  YWNTTKDLLINFPVSGVGYSFQY-RNLGETENKGWEVTLNWNAIN--KKNYALSFNANVG 778

Query: 798  LNKSKYDGFGNAL---RSLNKQQENNKTLLRFTDGYSPDDI------------------- 835
             NK+K    G+ +           + ++  +   G+S  +I                   
Sbjct: 779  FNKNKVKSLGSLMDYSADSGWASTDIQSDFKVQPGHSVGEIYGFVSDGRYEVSDFEGFID 838

Query: 836  --WAAKSLGIDPATG--REMFLRN--------DGQYTFDYSLGSVQAVGNTNPVIEGIFT 883
              W  K+ G+  A+    E +LR         DG      +    + +G+TNP   G F+
Sbjct: 839  GKWVLKA-GVADASDIIGEKYLRPGAMKLKNVDGSEDNKVTKDDQKVIGDTNPFCSGGFS 897

Query: 884  STFSFKGFNLGVYLRYRLGGDIFNTALYNKVENITYTNIASNQ-----DKRALYDRWQK- 937
                  GF+L     Y +G DI+N    NK+E   YT+ +  +     D  A   RW   
Sbjct: 898  VNARVYGFDLTANFTYSIGNDIYNA---NKIE---YTSSSKYKYRNMIDVMAEEKRWTNL 951

Query: 938  ------PGDVAQFKGISQTAT--TPMSSRFVQKENTISGES------ISMGYTFDRSAWL 983
                    D  Q   ++   +  +P + ++V  +  +   S      +S+GYT  ++   
Sbjct: 952  NADGTICNDPTQLAAMNANTSMWSPWTQKYVLTDWAVEDGSFLRLATLSIGYTLPQTL-T 1010

Query: 984  KKFGMRSLNLSALTNDIFRISS 1005
            +K G+++L   A   ++F I++
Sbjct: 1011 RKVGIQNLRFYATGYNLFCITN 1032