Pairwise Alignments

Query, 1028 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1003 a.a., SusC, outer membrane protein involved in starch binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  237 bits (605), Expect = 3e-66
 Identities = 279/1086 (25%), Positives = 469/1086 (43%), Gaps = 153/1086 (14%)

Query: 7    KRNVPKRVLLLLLC-LYLGLSAYAQTPSVKGVIKDAK-ETIVGATVIAQNVQTGIKTTTS 64
            K N   +VLL+L+  ++L + A+AQ  +VKG++KD   E ++GA V+ +   TG  T T 
Sbjct: 3    KGNFMFKVLLMLIAGIFLSIDAFAQQITVKGIVKDTTGEPVIGANVVVKGTTTG--TITD 60

Query: 65   SDKNGVFSFPRLAAGPYKFTINFIGYETKTVTGEVRDGGTFSLSVVLKESSTSLDKDVIV 124
             D N    F   A       ++FIGY+ + +    +      ++V+LK+ +  LD +V+V
Sbjct: 61   FDGN----FQLSAKQGDIIVVSFIGYQPQELPVAAQ------MNVILKDDTEILD-EVVV 109

Query: 125  TGTGITRNKNSFTGVTATFSGETLKSIGNNNIIQSLRTLDPSFILMENNLAGANPNVLPV 184
             G G  + KN  TG       + L      N    L        ++ N+     P     
Sbjct: 110  IGYGQVK-KNDMTGSVMAIKPDELSKGITTNAQDMLSGKIAGVSVISND---GTPGGGAQ 165

Query: 185  IEVRGKTSVPTATLKDQFGTDPNQPLFILDGFETTLQNIVDL-------DMNRVASVTIL 237
            I +RG +S+  +          N PL ++DG     + I  +       +   + ++T+L
Sbjct: 166  IRIRGGSSLNAS----------NDPLIVIDGLAIDNEGIKGMANGLSMVNPADIETLTVL 215

Query: 238  KDAASTALYGARASNGVVVVETIRPKAGQLQFTYSNDFRVESPDLSGYNMMNAAEKLQFE 297
            KDA++TA+YG+RASNGV+++ T + K GQ            +P +S YN       + F 
Sbjct: 216  KDASATAIYGSRASNGVIIITTKKGKNGQ------------APSVS-YN-----GSVSFS 257

Query: 298  KLAGRYNYFVSNATYQQIGLDQIYNNHLAAVKRGVDTYWLNEPVQTGITENNSIYAQGGD 357
            K   RY+  +S   Y+    +Q++ + L A     +T W ++  +T ++ ++ +   GG 
Sbjct: 258  KTQKRYDV-LSGDEYRAYA-NQLWGDKLPADLGTANTDWQDQIFRTAVSTDHHVSINGGF 315

Query: 358  QAFTYGVGLNYKTQSGAMKGSGRDTWSGNINLTYR----KGKFNINNILYVRG---YSST 410
            +   Y V L Y   +G +K S    ++ ++NL         KFNIN   ++ G   Y+ T
Sbjct: 316  KNLPYRVSLGYTDDNGIVKTSNFRRFTASVNLAPSFFEDHLKFNIN-AKFMNGKNRYADT 374

Query: 411  DSPYGSFSNFVNANPYYI-KDPSQ----RYLEVSNTSTYSEL---------KVRNPLYDA 456
             +  G         P Y  +DP Q     +  +++T+ +S             +NPL   
Sbjct: 375  GAAIGGALAIDPTRPVYSNEDPYQFTGGYWQNINSTTGFSNPDWKYTSNPNSPQNPLAAL 434

Query: 457  SLPNTSTAENLEVQN-NFQLNYDISSDLQIR---GGLQLVKGSVTAVSFLAPENSVFEEV 512
             L N     N  V N +    +    DL++    GG        T VS  +  N+ +   
Sbjct: 435  ELKNDKANSNDFVGNVDVDYKFHFLPDLRLHASIGGEYAEGTQTTIVSPYSFGNNYYGWN 494

Query: 513  GALQRGKYTNSKTDNFSYQGNMLLTYGKVFGGKHSVTANARAEINNRDFRAVG----FVA 568
            G + + KY      N SY  N+ + Y K  G             N+ D    G    F  
Sbjct: 495  GDVTQYKY------NLSY--NIYVQYIKSLGA------------NDFDIMVGGEEQHFHR 534

Query: 569  EGFPEGSTGNPRFAYSYQSNAAPTASSSVYRTANATLS----ANYAYDMRYLFDFSYRLD 624
             GF EG   +   +Y+ + + A     + Y T N  +S     NY+   RYLF F+ R D
Sbjct: 535  NGFEEGQGWD---SYTQEPHDAKLREQTAYATRNTLVSYFGRLNYSLLNRYLFTFTMRWD 591

Query: 625  GSTAFGKNKQFSPYWSSGIGWNLNREHFFANTRWINRLKLYANIGVTGNQNYG-NITSVS 683
            GS+ F K+ ++  + S  +GW +  E+F  +   ++ LKL    G+TG QN G +   + 
Sbjct: 592  GSSRFSKDNRWGTFPSLALGWKIKEENFLKDVNVLSDLKLRLGWGITGQQNIGDDFAYLP 651

Query: 684  VYNFNSSTNYNQFGQ---GVSLATLGNPDLKPQKTTQISAGLDYSLFNDRLFGYVSVYNK 740
            +Y  N+      FG      S     N +LK +KTT  +AGLD+   N R+ G +  Y +
Sbjct: 652  LYVVNNEYAQYPFGDTYYSTSRPKAFNENLKWEKTTTWNAGLDFGFLNGRITGGIDGYFR 711

Query: 741  RTDPLVVAVDLPSSTGVFNYPL--NVGILNNKGMEFKLNYAPI------YNIEKRIVW-- 790
            +TD L+ +V +P  T  FN  +  N+G L N GMEF +N  PI      +++   I W  
Sbjct: 712  KTDDLLNSVKIPVGTN-FNAQMTQNIGSLENYGMEFSINAKPIVTKDFTWDLSYNITWNH 770

Query: 791  --VVGASGNLNKSKYDGFGNALRSLNKQQENNKTLLRFTDGYSPDDIWAAKSLGIDPATG 848
              +   +G  +   Y   G+ +      + NN  +     GY+ +  +  + +  +    
Sbjct: 771  NEITKLTGGDDSDYYVEAGDKI-----SRGNNTKVQAHKVGYAANSFYVYQQVYDENGKP 825

Query: 849  RE-MFLRNDGQYTFDYSLGSVQAVGNTNPVIEGIFTSTFSFKGFNLGVYLRYRLGGDIFN 907
             E MF+  +G  T D S            V+ G+ TS   +K F+    LR  L   ++ 
Sbjct: 826  IENMFVDRNGNGTID-SGDKYIYKKPAGDVLMGL-TSKMQYKNFDFSFSLRASLNNYVYY 883

Query: 908  TALYNKVENITYTNIASNQDKRALYDRWQKPGDVAQFKGISQTATTPMSSRFVQKENTIS 967
              L NK  N++ + + SN       + +      A   G+S      MS  F+   + + 
Sbjct: 884  DFLSNKA-NVSTSGLFSN-------NAYSNTSAEAVALGLSGQGDY-MSDYFIHNASFLR 934

Query: 968  GESISMGYTFDRSAWLKKFGMRSLNLSALTNDIFRISSVKR-----ERGID-YPFANTVS 1021
             ++I++GY+F      + +      + A   + F IS  K      + GID  P+   ++
Sbjct: 935  CDNITLGYSFQNLWKTQTYKGVGGRVYATVQNPFIISKYKGLDPEVKSGIDANPYPRAMT 994

Query: 1022 FTLRVS 1027
            F L +S
Sbjct: 995  FLLGLS 1000