Pairwise Alignments

Query, 1028 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1116 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  592 bits (1525), Expect = e-173
 Identities = 362/1032 (35%), Positives = 575/1032 (55%), Gaps = 54/1032 (5%)

Query: 30   QTPSVKGVIKDAKE-TIVGATVIAQNVQTGIKTTTSSDKNGVFSFPRLAAGPYKFTINFI 88
            +T +++G + D +   + G TV+    +  I T T +D  G FS   L  G     ++F+
Sbjct: 106  KTRTLEGKVVDEQGGELPGVTVLILGKERNIGTMTDAD--GAFSLG-LPEGDVTIRLSFV 162

Query: 89   GYETKTV-TGEVRDGGTFSLSVVLKESSTSLDKDVIVTGTGITRNKNSFTGVTATFSGET 147
            G +T  + TG++      +    LK  S  L+ +V+VTG     +KNSFTG + T + + 
Sbjct: 163  GMQTLEIHTGKLNLDKVHTFK--LKPDSKQLE-EVVVTGYAKI-SKNSFTGTSVTVTADQ 218

Query: 148  LKSIGNNNIIQSLRTLDPSFILMENNLAGANPNVLPVIEVRGKTSVPTATL------KDQ 201
            L S+   N++ +L+T DPSF + ENNLAG+NPN +P + +RG++ + T  L      K  
Sbjct: 219  LMSVSKTNVLGALQTFDPSFRIAENNLAGSNPNNVPELYIRGRSGIGTTQLDAQSLSKTS 278

Query: 202  FGTDPNQPLFILDGFETTLQNIVDLDMNRVASVTILKDAASTALYGARASNGVVVVETIR 261
               +PN P FI+DGFE ++Q + D+D +R+AS+TILKDAA+TA+YG+RA+NGVV++ T+ 
Sbjct: 279  LKNNPNLPTFIMDGFEISVQKLYDMDPSRIASITILKDAAATAMYGSRAANGVVIITTVT 338

Query: 262  PKAGQLQFTYSNDFRVESPDLSGYNMMNAAEKLQFEKLAGRYNYFVSNATYQQIGLDQIY 321
            PKAG++   Y+    +E PDL+ YNMMNA EKL+ E  AG +         +Q  LD +Y
Sbjct: 339  PKAGKVNIDYNFTGTLEYPDLTDYNMMNAREKLETEVAAGLFKANPEQGFSEQSRLDALY 398

Query: 322  NNHLAAVKRGVDTYWLNEPVQTGITENNSIYAQGGDQAFTYGVGLNYKTQSGAMKGSGRD 381
            N  L  V RGVDTYWL++P++T     +S+Y  GG +   +G   +Y +  G MKGS RD
Sbjct: 399  NQKLNNVVRGVDTYWLSKPLRTVFNHKHSLYLDGGTEDLRWGADFSYNSGEGVMKGSYRD 458

Query: 382  TWSGNINLTYRKGKFNINNILYVRGYSSTDSPYGSFSNFVNANPY--YIKDPSQRYLEVS 439
              +G ++L+YR G F + N        S +SPYGSFS++ +  PY  YI D + RYLE +
Sbjct: 459  RMAGGLSLSYRLGAFQVRNYFSYTYTKSQESPYGSFSDYTSKLPYDEYI-DENGRYLETT 517

Query: 440  NTSTYSELKVRNPLYDASLPNTSTAENLEVQNNFQLNYDISSDLQIRGGLQLVKGSVTAV 499
               T    +V NPLY+A+L N   +++ E+ NN +L ++I S   ++G   + K +  A 
Sbjct: 518  YPWTGGSGEV-NPLYEATLKNYDRSKSWELINNTELLWNIDSYWLLKGQFSVTKSNSDAR 576

Query: 500  SFLAPENSVFEEVGALQR---GKYTNSKTDNFSYQGNMLLTYGKVFGGKHSVTANARAEI 556
            +FL P +   +++  L     G+   + +++ S+     L+Y +    KH++        
Sbjct: 577  TFLDPRSKKNDDLLGLNNVVSGQLDIATSNSLSWDATATLSYNRNI-KKHNLNFLVGINA 635

Query: 557  NNRDFRAVGFVAEGFPEGSTGNPRFAYSYQSNAAPTASSSVYRTANATLSANYAYDMRYL 616
             +    + G   +GFP G   +P   Y  + +  P+ S S  R   A  + NY++D  YL
Sbjct: 636  TSSTGDSFGITYKGFPSGELSSP--GYGNKVSGLPSNSDSKSRLFGALGTFNYSFDNIYL 693

Query: 617  FDFSYRLDGSTAFGKNKQFSPYWSSGIGWNLNREHFFANTRWINRLKLYANIGVTGNQNY 676
             D S R DG++ FG +++F+P++S G+G NL+   F     W++RLK+    G+TG  ++
Sbjct: 694  ADVSVRFDGNSEFGADQRFAPFFSGGLGLNLHNYKFMKQFEWMDRLKIRGTYGITGKVDF 753

Query: 677  GNITSVSVYNFNSSTNYNQFGQGVSLATLGNPDLKPQKTTQISAGLDYSLFNDRLFGYVS 736
                + ++Y    + N+ + G G SL  LGN  L  +KT  +  GLD  +F   L    S
Sbjct: 754  SPYEAQTIYKV-VTDNWFKTGLGASLMALGNNGLGWEKTHNMDLGLDVDMFKGLLQMNFS 812

Query: 737  VYNKRTDPLVVAVDLPSSTGVFNYPLNVGILNNKGMEFKLNYAPIYNIEKRIVWVVGASG 796
             Y K+T  LV +V LPSSTG  +Y  N+G + NKG+E +L      NI     W V    
Sbjct: 813  YYRKKTVDLVNSVTLPSSTGFTSYKDNIGEVMNKGVEIQLR----SNILNAKDWFVAVFA 868

Query: 797  NL--NKSKYDGFGNALRSLNKQQEN--------------NKTLLRFTDGYSPDDIWAAKS 840
            N+  N++K     ++L+  NK+ +               ++T L++ +G S   I+  +S
Sbjct: 869  NMAHNENKITKISDSLKEYNKRVQEKYAKYDSGKGDSKYSETYLQYVEGGSLTSIFGVRS 928

Query: 841  LGIDPATGREMFLRNDGQYTFDYSLGSVQAVGNTNPVIEGIFTSTFSFKGFNLGVYLRYR 900
            LGI+PA G+E++LR DG  T+D++      +GN  P ++G F     +K F+L     Y 
Sbjct: 929  LGINPADGKEIYLRPDGTITYDWNAADQVVIGNEEPKLQGTFGFNLRWKQFSLYSTFMYE 988

Query: 901  LGGDIFNTALYNKVENITYTNIASNQDKRALYDRWQKPGDVAQFKGISQT----ATTPMS 956
             GG  +N+ L +KVEN      +SN D+R L  RWQKPGD   + G  QT    A T  +
Sbjct: 989  FGGQRYNSTLVSKVENAHIQ--SSNVDRRVLTGRWQKPGDCTPY-GRLQTDGVVAVTRPT 1045

Query: 957  SRFVQKENTISGESISMGYTFDRSAWLKKFGMRSLNLSALTNDIFRISSVKRERGIDYPF 1016
            SRF+Q  N ++  S+++GY F+ + WLKK  +  L +    ND+FR+++V+ ERG+DYP+
Sbjct: 1046 SRFIQDYNVLTFNSLTLGYDFN-AEWLKKARIGLLRVELSGNDLFRVATVRAERGLDYPY 1104

Query: 1017 ANTVSFTLRVSF 1028
            + + + ++++SF
Sbjct: 1105 SRSFAASVKMSF 1116