Pairwise Alignments

Query, 1028 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 999 a.a., TonB-dependent receptor for dextran (SusC-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  239 bits (609), Expect = 9e-67
 Identities = 278/1078 (25%), Positives = 465/1078 (43%), Gaps = 153/1078 (14%)

Query: 13   RVLLLLLCLYLGLSAYAQTPSVKGVIKDAK-ETIVGATVIAQNVQTGIKTTTSSDKNGVF 71
            R+LL++  L L LSA+AQ  +VKG + DA  E ++GA+VI      G    T +D +G F
Sbjct: 13   RLLLIMWGLLLSLSAFAQQITVKGHVVDATGEPVIGASVIEGKSTNG----TITDIDGNF 68

Query: 72   SFPRLAAGPYKFTINFIGYETKTVTGEVRDGGTFSLSVVLKESSTSLDKDVIVTGTGITR 131
            S    A      TI+F+GY+T+TV+      G  +L V L+E +  LD +V+V G G T 
Sbjct: 69   SLNVSANSA--LTISFVGYKTQTVSVN----GKTALKVTLQEDTEVLD-EVVVVGYG-TM 120

Query: 132  NKNSFTGVTATFSGETLKSIGNNNIIQSLRTLDPSFILMENNLAGANPNVLPVIEVRGKT 191
             K+  TG  ++   + +K     NI Q+++       +++    G N      I++RG  
Sbjct: 121  KKSDLTGAVSSVGVKDIKDSPVANIGQAMQGKVSGVQIIDAGKPGDNVT----IKIRGLG 176

Query: 192  SVPTATLKDQFGTDPNQPLFILDGFETTLQNIVDLDMNRVASVTILKDAASTALYGARAS 251
            ++           + + PL ++DG  T L  +  L+M  V  V +LKDA++TA+YG+R +
Sbjct: 177  TI-----------NNSNPLVVIDGIPTDL-GLSSLNMADVERVDVLKDASATAIYGSRGA 224

Query: 252  NGVVVVETIRPKAGQLQFTYSNDFRVES----PDLSGYNMMNAAEKLQFEKLAGRYNYFV 307
            NGVV++ + R   G  + T + ++ +++    PD     M+NAA+       A   N  +
Sbjct: 225  NGVVMITSKRGAEGAGKVTVNANWAIQNATKVPD-----MLNAAQ------YAALSNDML 273

Query: 308  SNATYQQIGLDQIYNNHLAAVKR-GVDTYWLNEPVQTGITENNSIYAQGGDQAFTYGVGL 366
            SN        D   N + A     G  T WL+E ++TG+ ++ S+   GG +   Y V  
Sbjct: 274  SNN-------DDNTNPYWADPSSLGKGTNWLDEMLRTGVKQSYSVSYSGGTEKAHYYVSG 326

Query: 367  NYKTQSGAMKGSGRDTWSGNINLTYRKGKFNINNILYVRGYSSTDSPYGSFSNFVNANPY 426
             +  QSG +K           ++ YR+  F  N+   V  +    +   +FS  V     
Sbjct: 327  GFLDQSGIVK-----------SVNYRRFNFQANSDAQVNKWLKFTTNL-TFSTDVKEGGT 374

Query: 427  YIKDPSQRYLEVSNTSTYSELKVRNPLYDASLPNTSTAENLEVQNNFQLNYDISSDLQIR 486
            Y    + + L            V+N     S P         ++N     + ++++ +  
Sbjct: 375  YSIGDAMKALPTQ--------PVKNDDGSWSGPGQEAQWYGSIRNPIGTLHMMTNETKGY 426

Query: 487  GGLQLVKGSVTAVSFLAPENSVFEEVGALQRGKYTNS--------------KTDN--FSY 530
              L  + G +T   +L  +++   +        +T +              K+DN  F+Y
Sbjct: 427  NFLANITGEITFTKWLKLKSTFGYDAKFWFADNFTPAYDWKPNPVEESSRYKSDNKSFTY 486

Query: 531  QGNMLLTYGKVFGGKH--SVTANARAEINNRDFRAVG---FVAEGFPEGSTGNPRFAYSY 585
              +    +   F  KH   V A + A+ NN D+       F+ +   E   G   ++   
Sbjct: 487  LWDNYFVFDHTFAKKHRVGVMAGSSAQWNNYDYLNAQKNIFMFDNIHEMDNGEKMYSLG- 545

Query: 586  QSNAAPTASSSVYRTANATLSANYAYDMRYLFDFSYRLDGSTAFGKNKQFSPYWSSGIGW 645
                    S S +   +     NY+Y+ +YL   + R DGS+ FGKN ++  + S  + W
Sbjct: 546  -------GSQSDWALLSLMARLNYSYEDKYLLTATVRRDGSSRFGKNNRWGTFPSVSLAW 598

Query: 646  NLNREHFFANTRWI-NRLKLYANIGVTGNQNYGNITSVSVYNFNSSTNYNQFGQGVSLA- 703
             +++E +F    ++ N LKL    GVTGNQ  GN   V+ YN    T    FG   S A 
Sbjct: 599  RVSQEDWFPKDNFLMNDLKLRVGYGVTGNQEIGNYGFVASYN----TGVYPFGNNNSTAL 654

Query: 704  ---TLGNPDLKPQKTTQISAGLDYSLFNDRLFGYVSVYNKRTDPLVVAVDLPSSTGVFNY 760
               TL NP++  ++  Q + G+D SLF+ R+   +  Y K T+ ++V   +P ++G  + 
Sbjct: 655  VSTTLSNPNIHWEEVRQANFGVDMSLFDSRVSLSLDAYIKNTNDMLVKASIPITSGFEDT 714

Query: 761  P---LNVGILNNKGMEFKLNYAPIYNIEKRIVWVVGASGNLNKSK-YDGFGNALRSLNKQ 816
                 N G + NKG+E  L      N++    W    +   NK++  D        +N+ 
Sbjct: 715  TETFTNAGKMRNKGVEMTLR---TINLKGIFSWESALTATYNKNEILDLNSETPMFINQI 771

Query: 817  QENNKTLLR------FTDGYSPDDIWA--------AKSLGIDPATGREMFLRNDGQYTFD 862
              +  T+L+         GY  D ++         A   G  P   R   L NDG    +
Sbjct: 772  GNSYVTMLKAGYPINVFYGYVTDGLFQNWGEVNRHATQPGAAPGDIRFRDLNNDGVINDE 831

Query: 863  YSLGSVQAVGNTNPVIEGIFTSTFSFKGFNLGVYLRYRLGGDIFNTALYNKVENITYTNI 922
                    +GN NP      ++  S+KG+ L V+L+   G  I+N    N V+N      
Sbjct: 832  ----DRTILGNPNPNWFFSLSNNLSYKGWELSVFLQGVAGNKIYNA---NNVDNEGMA-- 882

Query: 923  ASNQDKRALYDRWQKPGDVAQFKGI---SQTATTPMSSRFVQKENTISGESISMGYTFDR 979
            A+     A+ +RW   G                  +S RFV+  + +  ++I++ YT  +
Sbjct: 883  AAYNQTTAVLNRWTGEGTSYSMPRAIWGDPNQNCRVSDRFVENGSYLRLKNITLSYTLPK 942

Query: 980  SAWLKKFGMRSLNLSALTND---IFRISSVKRE---RGID---YPFANTVSFTLRVSF 1028
              WL+K  + +  +S    +   I R S    E    GID   YP + T S  L  +F
Sbjct: 943  K-WLQKIQLENARISFSCENVATITRYSGFDPEVDVNGIDSSRYPISRTFSMGLNFNF 999