Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1139 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  330 bits (846), Expect = 4e-94
 Identities = 302/1150 (26%), Positives = 497/1150 (43%), Gaps = 133/1150 (11%)

Query: 29   ILISALLQVSAAGMAQHLTLNKKNVSLAQVFKEIRKQTGYSILWESEKFDANGKVSVEFK 88
            I +   + +S    +Q +T++ K +SL    K+I + + Y   +     + + KVS+  +
Sbjct: 27   ICLLLFMSISLTAYSQ-ITVDLKGISLRASLKKIEQVSNYKFFYSESLPELSWKVSLNVR 85

Query: 89   NSSLKEVLNFIINSDKYSYLIDEKTIVIQPKDKYELNDQIVVSGKVVDENGSPLSGASVV 148
            + ++ + +  ++   + +Y  +++ +++  +          V+G VVD NG P+ GAS+V
Sbjct: 86   DVTIDQTMTRLLEGMELTYKKEQENVIVLIRKTQSKQLTKKVTGTVVDANGEPIIGASIV 145

Query: 149  LKANGKGTSTTVDGTFTMSGVDDGAILVIKYIGFDPKEVKAARE-LGTIKLNLATSELDA 207
            +K    GT T  DG F +  V + A+L I YIG+    +    + L  + L   +  +D 
Sbjct: 146  IKGESHGTITDFDGKFALPDVPEKAVLTISYIGYKTVNLATTDQTLVKVVLEEDSKMIDE 205

Query: 208  VQIQAYTTTSKRLSLSNSVSVRAKEIEDQIVSNPLLALQGKVAGIQIQQVSGNAGATINV 267
            V +  Y   S++L  ++   V+ + I+     NP+  LQG+VAG+ I   SG  G T N+
Sbjct: 206  VVVVGYGVQSQKLVTTSISKVKMENIDQGNDYNPIKMLQGRVAGVNISSASGTPGETPNI 265

Query: 268  KIQGVSSFRGNSSPFFVVDGVPYSSTTMVGTGNINLWGEATPTALGVAGNNAGISYGSGN 327
             ++G+ S  G SSP +VVDG+P                E  P                  
Sbjct: 266  TVRGIGSVSGGSSPLYVVDGIP---------------SEKYPN----------------- 293

Query: 328  PLSFLNPDDIESIDVLKDADATAIYGSRAANGAIVITTKRGKPGTLQIDFSSRNGWNQAT 387
                LNP+DIES++VLKDA A AIYGSRA  G ++ITTK G+ G  +I+ S R G+    
Sbjct: 294  ----LNPNDIESMEVLKDASAAAIYGSRANAGVVLITTKSGQQGKTKIEVSGRYGFASLA 349

Query: 388  FGADFLNTEQYLGIRNEAYRNSNAVISATNYDLNGIWDKEKFTDWQKELIKTTGYDDA-S 446
               +  N+ +Y+     A  N N V   TN  L  I  + + TDW KE+ +      A S
Sbjct: 350  SDIEMANSTEYMNTMQAAIDNYN-VQMGTNLQLY-IPSQIQETDWVKEISRKNSKTGAGS 407

Query: 447  LSVSGGTLNSSYRLNLTGNRQNSAYARNFRNDNIALSISLNTASANQKFKLGIVGNYLNG 506
            +S+SGG   +++  +L  N Q   Y    + D   +     +   N  FKL +    L G
Sbjct: 408  ISISGGNEKTTFFASLGANTQ-EGYLNKSKYDQYNMRAKF-SHKINSIFKLNM---NLAG 462

Query: 507  FNNLPSLNQTTAGSFLYLLPPNAP----NLYNTDGTLNWDMDPTGTISRFRNPLSTYLTN 562
              +   L + T+ S   L          + Y  DGT        GT     NPL      
Sbjct: 463  SASRSDLLEETSTSLKVLRTAREEQPWYSPYKEDGT---SYKVNGTDILRHNPLMLINEE 519

Query: 563  PFEVKTNNFTSNITASYNIVNGLDF-KTSFGYNRLDQQEFTSNLAESVAPTARNTFIRSG 621
             +  K    +   +       G  +  T   Y  LD    +  L++       ++   + 
Sbjct: 520  DWVAKKYQLSGVFSIDVTPFKGFKYTPTVSAYGILD--NVSKKLSDKHDARKNSSGWGAL 577

Query: 622  SYRFTNTNNYIIEPQILYNHQFSGHKLNFLLGATYNKSQGETSGITGSGQSSDSQVKNLS 681
            + +   +  Y+I+    YN++++    + +LG ++ K   E       G  SD+      
Sbjct: 578  AQQKDQSFRYVIDNVFSYNNEWNKLIYSVMLGHSFEKYTYEQ-----FGAKSDNYANGAY 632

Query: 682  ASSSFNQTGS---------SFYEYRYNAGFFRLDYNFKERYLLGLSARRDGSTRFGPDNR 732
             SSSF+   +         S+  Y   + F R+  N+  +Y+L  S R DGS+RF  + R
Sbjct: 633  PSSSFDLINAGPNIYAGDISYTSYALESYFGRIALNWDNKYILNASLRSDGSSRFAKNKR 692

Query: 733  FANFWSAAVGWIVSEETLVKEKLPWLNFFKLRANYGLTGS-DGVGDYTFMDLYSANTFYL 791
            +  F SA+  W  S E     K  ++N  KLR ++G+TGS  GV +Y  + L SA     
Sbjct: 693  YGYFPSASFAWRASNEGFF-PKNKYVNDAKLRLSWGMTGSMAGVSNYAPLSLISAGG--A 749

Query: 792  PYQNVVGFAPGRLLNSKLQWEEKRSLNIGFDANLLNNRVTLGINYNRNRSSNLLQSLNLP 851
             Y    GF   +   + L WE+    NIGFD  +  +R+TL ++    ++++LL    + 
Sbjct: 750  SYNGSAGFQISQDARA-LTWEKASQFNIGFDIEMFQSRLTLNVDMFYQKTTDLLFKKPVN 808

Query: 852  VTAGFASVDVNFDALVQNTGWEYTIGVKLLAAKAFKWNVNANLTVPTNKLLSLPSLDKVN 911
             + G+ ++  N  +L +N G E  +  K+L  K FKW++  N++   NKLLSL    ++ 
Sbjct: 809  ASTGYTTLQSNIGSL-ENKGLELALNGKILTGK-FKWDLGGNISFVKNKLLSLIEGSEMY 866

Query: 912  RVAGFGYHI----------GLPLGTTTMNTYMGV--------------NPLTGLEVLEDI 947
             V   G ++          G P+ T  M    G+                  G     D 
Sbjct: 867  VVPSSGSNLLGGSMHALINGEPISTFYMLKMEGIYQRDDEVPAKLYAKGVRAGDVRYFDY 926

Query: 948  NGNPVATAGSTANMKTTLRNLYTSPFYAGLQSSFEYKGLSMNL--SFDFNKQLKPRYFFV 1005
            N +   T     N+   + +     FY G+ S+F YKG  ++L   F    ++   +  V
Sbjct: 927  NEDGDITDADRVNVGKAIPD-----FYGGITSNFSYKGFDLSLFGQFSVGGKVMAAWRGV 981

Query: 1006 SSRPGRDAY-------------NQPEIAYSLNR------WENPGDIAVIQK-----YSTL 1041
            +   G D                  E  +++++      W   G    I +       T 
Sbjct: 982  NGSEGTDHLGLALSNVKVGDRGESVEQFFNISKEVANGYWRGEGTSNSIPRPVRIGVHTG 1041

Query: 1042 LGSGLLTQTEAFY-EDATYLRLTNIAISWNLPKSWTGIIGMKSSRIGINAQNLFTLSKYS 1100
                   QT   Y EDA+Y +L  + + + LP+S T  I + S R  ++A NL   +KYS
Sbjct: 1042 YDYDYNVQTSTRYLEDASYFKLKTVTLGYTLPESITKKIHVNSLRFYVSADNLLAFTKYS 1101

Query: 1101 GPDPITGPSG 1110
            G DP T  SG
Sbjct: 1102 GYDPETSFSG 1111