Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  323 bits (827), Expect = 6e-92
 Identities = 279/1049 (26%), Positives = 468/1049 (44%), Gaps = 142/1049 (13%)

Query: 130  VSGKVVDENGSPLSGASVVLKANGKGTSTTVDGTFTMSGVDDGAILVIKYIGFDPKEVKA 189
            V G +VDE  +PL GA+V +K    G+ T  DG +T+   + GA++   YIG+  +E+K 
Sbjct: 34   VKGVIVDETDTPLIGATVQVKGTATGSITDFDGNYTIKA-NKGAVITFSYIGYKTQEIKF 92

Query: 190  ARELG-TIKLNLATSELDAVQIQAYTTTSKRLSLSNSV-SVRAKEIEDQIVSNPLLALQG 247
              +    +K+      LD V +  Y T  KR  L+ SV S+ AK++E    S+   AL G
Sbjct: 93   TGQSPLNVKMIPDNQTLDEVVVVGYGTM-KRSDLTGSVASIAAKDVEGFKTSSVAGALGG 151

Query: 248  KVAGIQIQQVSGNAGATINVKIQGVSSFRGNSSPFFVVDGVPYSSTTMVGTGNINLWGEA 307
            ++AG+QI    G  GA  ++ I+GV +  G+SSP ++VDG                    
Sbjct: 152  QIAGVQITSTDGTPGAGFSINIRGVGTLTGDSSPLYIVDGFEVDD--------------- 196

Query: 308  TPTALGVAGNNAGISYGSGNPLSFLNPDDIESIDVLKDADATAIYGSRAANGAIVITTKR 367
                                 + +L+  DIESI+VLKDA ++AIYG+RAANG ++ITTK 
Sbjct: 197  ---------------------IDYLSNSDIESIEVLKDASSSAIYGARAANGVVLITTKS 235

Query: 368  GKPGTLQIDFSSRNGWNQATFGADFLNTEQYLGIRNEAYRNSNAVISATNYDLNGI---- 423
            GK G   I ++    + + +   D L+  +++ ++ E     +        D N I    
Sbjct: 236  GKTGRPTITYNGSASYRKISKKLDVLSPYEFVKLQGEVNSKYSDSYFKPGNDDNDIPYRY 295

Query: 424  -----WDKEKFTDWQKELIKTTGYDDASLSVSGGTLNSSYRLNLTGNRQNSAYARN---- 474
                 +   K  +WQ E    T   D SLS+ GGT +S Y  + +   +N  +  +    
Sbjct: 296  QSLDDYMGVKGVNWQDETFNPTWSQDHSLSIMGGTDDSKYNASFSRYIENGIFKNSGFDK 355

Query: 475  ----FRND-----NIALSISLNTASANQKFKLGIVGNYLNG-FNNLPSLNQTTAGSFLYL 524
                FR D     +++ +I++N A  N+K   G+  +  +G FN L  +        L L
Sbjct: 356  TTGKFRLDQKLSKSLSFNITVNYALTNRK---GVGTSADSGRFNMLAQILSARPTGGLKL 412

Query: 525  LPPNAPNLYNTDGTLNWDMDPTGTISRFRNPLSTYLTNPFEVKTNNFTSNITASYNIVNG 584
                       D  ++ +M  +G      NP+    +     +   ++ N + S+ I+ G
Sbjct: 413  TDDEL-----LDSAIDPEMLESGESLAQVNPVKQTESVTNTKRAEMWSGNGSISWQIIKG 467

Query: 585  LDFKTSFGYNRLDQQE--FTSNLAESVAPTARNTFIRSG---SYRFTNTNNYIIEPQILY 639
            L FKT+  YN  + +   F  + ++      +  + R+      R+TN NN      + +
Sbjct: 468  LTFKTAGTYNTTNNRTNIFYKDGSKEAYRNGQKPYGRTQMGRDVRWTNFNN------LTW 521

Query: 640  NHQFSGHKLNFLLGATYNKSQGETSGITGSGQSSDSQVKNLS-----ASSSFNQTGSSFY 694
              +   H  + +LG  +  S   T  + G  ++ D    NL        ++ ++  SS+ 
Sbjct: 522  KQKVKKHNYDVMLG--HEVSFRSTEYLLG--EAMDFPFDNLGNDYLGLGATPSKVESSYS 577

Query: 695  EYRYNAGFFRLDYNFKERYLLGLSARRDGSTRFGPDNRFANFWSAAVGWIVSEETLVKEK 754
            E    + F R +YN+  RYLL  + R DGST F   N++  F S +  W VSEE  +K+ 
Sbjct: 578  EKMLLSFFARGNYNYDNRYLLTATVRADGSTVFSNKNKWGFFPSFSAAWRVSEEAFMKD- 636

Query: 755  LPWLNFFKLRANYGLTGSDGVGDYTFMDLYSANTFYLPYQNVVGFAPGRLLNSKLQWEEK 814
            + W++ FK+R  +G+ G+D + +Y  MDLY A+ + +    V    P +L N+ L+WE  
Sbjct: 637  VDWVSNFKVRLGWGIVGNDRISNYLSMDLYEASKYGVGNNTVTVLTPKQLKNANLKWEGS 696

Query: 815  RSLNIGFDANLLNNRVTLGINYNRNRSSNLLQSLNLPVTAGFASVDVNFDALVQNTGWEY 874
             ++N+G D   L+NR+ +  ++    + +LL + +L    GF S   N    +QN G E 
Sbjct: 697  STINLGVDLGFLDNRLNVTADFFVKNTKDLLLAQSLAHVTGFDSQMQNI-GKIQNKGIEL 755

Query: 875  TIGVKLLAAKAFKWNVNANLTVPTNKLLSLPS--------------LDKVNRVAGFGYHI 920
            ++    +  + F W  N N++   N L  L S                  + +A  G  +
Sbjct: 756  SLNSTNIQTRDFSWQTNFNISFIKNTLKGLASGVESMYARSGFDSNFTAYDYIATVGQSL 815

Query: 921  GLPLGTTTMNTYMG----VNPLTGLEVLEDINGNPVATAGS-----------------TA 959
            GL  G      Y        P   L + E +  N  A  G+                 T 
Sbjct: 816  GLIYGYEFDGVYQSSDFYTTPDNQLILKEGVTNN--ARYGTVKPGVVKYKDQDGDGIITT 873

Query: 960  NMKTTLRNLYTSPFYAGLQSSFEYKGL--SMNLSFDFNKQL--KPRYFFVSSRPGRDAYN 1015
            N +T + N     ++ G+ ++F+YKG+  S  L F++   +    R +   SR GR    
Sbjct: 874  NDRTVIGNAMPK-WFGGITNTFDYKGIDFSFMLQFNYGNDIYNATRLYSTQSRNGR---- 928

Query: 1016 QPEIAYSLNRWENPGDIAVIQKYSTLLGSGLLTQTEAFYEDATYLRLTNIAISWNLPKSW 1075
            +  +A   +RW       ++      + + + ++   F ED ++LRL N+ + + LP  W
Sbjct: 929  RNMLAEVADRWSPTNTSNLVPSQDGYIVNDVYSR---FIEDGSFLRLKNVTLGYTLPHKW 985

Query: 1076 TGIIGMKSSRIGINAQNLFTLSKYSGPDP 1104
            T    +   R+    QNLF +S YSG DP
Sbjct: 986  TRKFHVSRLRLYATGQNLFCVSGYSGYDP 1014