Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1001 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  326 bits (835), Expect = 6e-93
 Identities = 284/1028 (27%), Positives = 457/1028 (44%), Gaps = 141/1028 (13%)

Query: 127  QIVVSGKVVDENGSPLSGASVVLKANGKGTSTTVDGTFTMSGVDDGAILVIKYIGFDPKE 186
            Q   SG+V+D    PL G SV  K    G  T +DG FT++ V   A L+  Y+G+  +E
Sbjct: 32   QFTASGQVLDAQKEPLIGVSVQEKGTTNGAITDLDGNFTLT-VQSNATLIFSYVGYKSQE 90

Query: 187  VKAARELGTIKLNLATSELDAVQIQAYTTTSKRLSLSNSVS-VRAKEIEDQIVSNPLLAL 245
             KA+R++  + L      L+ V +  Y +  KR  ++ ++S V  K+++ + + +   A+
Sbjct: 91   QKASRQM-KVTLQEDNEVLEEVVVIGYGSV-KRKDVTTAISTVSTKDLDVRPIVSAGQAI 148

Query: 246  QGKVAGIQIQQVSGNAGATINVKIQGVSSFRGNSSPFFVVDGVPYSSTTMVGTGNINLWG 305
            QGK AGI + Q SG  G  ++++++G +S  G++ P +VVDGVP  +             
Sbjct: 149  QGKAAGISVIQPSGTPGGEMSIRVRGTTSMNGSNDPLYVVDGVPVDN------------- 195

Query: 306  EATPTALGVAGNNAGISYGSGNPLSFLNPDDIESIDVLKDADATAIYGSRAANGAIVITT 365
                                   + FL+P+DIES+ +LKDA + +IYGSRAANG I+ITT
Sbjct: 196  -----------------------IKFLSPNDIESMQILKDASSASIYGSRAANGVILITT 232

Query: 366  KRGKPGTLQIDFSSRNGWNQATFGADFLNTEQYLGIRNEAYRNSNAVISATNYDLNGIWD 425
            K G  G  ++  +++ G N+     + LN  QY  +++E       ++S      +G+ D
Sbjct: 233  KAGATGKAKVSLTAQFGLNKVADKVESLNAAQYKELQDEI-----GLVSLP----DGLPD 283

Query: 426  KEKFTDWQKELIKTTGYDDASLSVSGGTLNSSYRLNL-----TGNRQNSAYAR-NFRND- 478
            +   TDW  E  KT    +  ++VS G     Y L+       G    S Y R NFR + 
Sbjct: 284  R---TDWFDETYKTGKMQNYQVAVSNGNEKMKYYLSAGYLDEKGILDISYYKRYNFRVNL 340

Query: 479  --------NIALSISLNTASANQKFKLGIVGNYLNGFNNLPSLNQTTAGSFLYLLPPNAP 530
                     ++ +IS +  ++N    +G   N   G   L  +N  T       L PN  
Sbjct: 341  ENQIRSWLTVSANISYSDYTSNGGGAMGTGAN--RGGVVLAVINTPTYAPIWDALNPN-- 396

Query: 531  NLYNTDGTLNWDMDPTGTISRFRNPLSTYLTNPFEVKTNNFTSNITASYNIVNGLDFKTS 590
              YN    +    +P   ++R +N          + K N   ++      ++  L FK++
Sbjct: 397  QYYNNFYGVGNITNPLENMARAKNN---------KDKENRLLASGNVLLTLLPELKFKST 447

Query: 591  FGYNRLDQQEFTSNLAESVAPTARNTFIRSGSYRFTNTNNYIIEPQILYNHQFSGHKLNF 650
               +R +    T+ L        RN +  +   R  NT     +    YN  F  H L  
Sbjct: 448  LTLDRRNAVN-TTFLDPISTAWGRNQYGEASDNRNMNT-VLTFDNVFTYNKNFKRHGLEV 505

Query: 651  LLGATYNKSQGETSGITGSGQSSD-SQVKNLSASSSFNQTGSSFYEYRYNAGFFRLDYNF 709
            + G+++  S    S I GS   +D  Q  N +   +++ TG+   ++   + F R+ YNF
Sbjct: 506  MAGSSWTDSDYSNSWINGSHYRNDLIQTLNAANKIAWDNTGTGASQWGIMSFFGRVAYNF 565

Query: 710  KERYLLGLSARRDGSTRFGPDNRFANFWSAAVGWIVSEETLVKEKLPWLNFFKLRANYGL 769
              +YLL  + R DGS++  PD+R+  F S +  W VS E  + + L W++ FK+R  +G 
Sbjct: 566  DSKYLLTANLRADGSSKLHPDHRWGVFPSFSAAWRVSSEKFMAD-LTWIDDFKIRGGWGQ 624

Query: 770  TGS-DGVGDYTFMDLY----------SANTFYLPYQNVV-GFAPGRLLNSKLQWEEKRSL 817
            TG+  G+GDY ++  Y          +A      Y N V   +   L  S L WE     
Sbjct: 625  TGNQSGIGDYAYLQRYNIGRIEWFKVAAEGDTTDYANAVPTISQANLRTSDLTWETTTQT 684

Query: 818  NIGFDANLLNNRVTLGINYNRNRSSNLLQSLNLPVTAGFASVDVNFDALVQNTGWEYTIG 877
            NIG D  +LN R+T  ++Y   ++ N+L +++LP  A  A+     +  + N G+E TI 
Sbjct: 685  NIGLDLTVLNGRLTFNMDYYYKKTKNMLMNVSLPAGAAAATSIARNEGEMTNKGFELTIS 744

Query: 878  VKLLAAKAFKWNVNANLTVPTNKLLSLPSLDKVNRVAGFGYHI---------GLPLGTTT 928
             K     AF W+ + N++   NKL  L  L KV   A     +         G  LG   
Sbjct: 745  SKNFRGGAFTWDTDFNISFNRNKLTKL-ELQKVYYDAKTADVVNDYVVRNEPGRALGGFY 803

Query: 929  MNTYMGVNPLTGLEVLEDINGNPVATAGSTANMKTTLRNLYTSPFYAGLQSSFEYKGLSM 988
                 GV+P TG  +  D++G+     G  +    T        F  GL ++F +KG ++
Sbjct: 804  GYISDGVDPETGELMYRDLSGD-----GKISTSDRTYIGDPNPDFTYGLTNTFSWKGFNL 858

Query: 989  NLSFDFNKQLKPRYFFVSSRPGRDAYNQPEIAYS------------LNRWENPGDIAVIQ 1036
            ++             F+    G D +N   I               LNRW+ PG I  + 
Sbjct: 859  SV-------------FIQGSYGNDIFNASRIETEGMYDGKNQSTKVLNRWKIPGQITNVP 905

Query: 1037 KYSTLLGSGLLTQTEAFYEDATYLRLTNIAISWNLPKSWTGIIGMKSSRIGINAQNLFTL 1096
            K      +  L  +  F ED +YLRL ++++S+N         G+   +    A NL T 
Sbjct: 906  K-----ANFKLLNSTYFIEDGSYLRLKDVSLSYNFKGKLLQKWGITRLQPYFTATNLLTW 960

Query: 1097 SKYSGPDP 1104
            + YSG DP
Sbjct: 961  TSYSGMDP 968