Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1061 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  315 bits (808), Expect = 9e-90
 Identities = 284/1043 (27%), Positives = 467/1043 (44%), Gaps = 101/1043 (9%)

Query: 130  VSGKVVDENGSPLSGASVVLKANGKGTSTTVDGTFTMSGVDDGAILVIKYIGFD----PK 185
            +SG VVDE  SP+ GA++ +K    GT T +DG F++   +  A L I YIGF     P 
Sbjct: 41   ISGVVVDEGKSPIIGATIQVKGANNGTITDIDGNFSLEVKNPKAQLQISYIGFTTITVPV 100

Query: 186  EVKAARELGTIKLNLATSELDAVQIQAYTTTSKRLSLSNSVSVRAKEIEDQI--VSNPLL 243
            ++K      TI +  A+  LD V +  Y T  K   LS SVS  + + E +I  +++   
Sbjct: 101  QLKGKM---TITMQEASRNLDEVVVIGYGTVRKS-DLSGSVSAVSMKNEAEIMPITSADQ 156

Query: 244  ALQGKVAGIQIQQVSGNAGATINVKIQGVSSFRGNSSPFFVVDGVPYSSTTMVGTGNINL 303
             LQG++AG+ I   SG  GA +N++I+GVS+  GN+ P +VVDG P  + T    G    
Sbjct: 157  FLQGRIAGVSIAANSGAPGAGMNIQIRGVSTLSGNTDPLYVVDGFPIEAATASVNG---- 212

Query: 304  WGEATPTALGVAGNNAGISYGSGNPLSFLNPDDIESIDVLKDADATAIYGSRAANGAIVI 363
                        G +      + NPL+ +NP+DIESI VLKDA ATAIYGSRA NG I+I
Sbjct: 213  ------------GTSELSQQPAMNPLASINPNDIESIQVLKDASATAIYGSRATNGVILI 260

Query: 364  TTKRGKPGTLQIDFSSRNGWNQATFGADFLNTEQYLGIRNEAYRNSNA------VISATN 417
            TTK+GK G + +++++R   +  +   + LN   Y    NE  R SN       VI +T 
Sbjct: 261  TTKQGKEGKVNVNYNARVDISNISKRYNLLNAHDYALFENELDRTSNGYDMQGNVIPSTK 320

Query: 418  YDLNGIWDKEKF----TDWQKELIKTTGYDDASLSVSGGTLNSSYRLNLTGNRQNSAYAR 473
               +     E++    TDWQ  + +T    D  L+V+GG   + Y +   G         
Sbjct: 321  VPRHTDDALERYKIYSTDWQDLMYQTAVSQDHQLAVNGGNKMTQYNIT-AGYTDQEGIIM 379

Query: 474  NFRNDNIALSISLNTASANQKFKLGIVGNYLNGFNNLPSLNQTTAGSFLYLLPPNAPNLY 533
            N   +  +  ++L +  A ++  L +  +Y        S +Q+++      +      + 
Sbjct: 380  NTGLERYSFRLNLKSELA-KRLVLQLNTSYSQTEQKQTSHSQSSS------MNQMVRRIL 432

Query: 534  NTDGTLNWDMDPTGTISRFRNPLSTYLTNPFEVKT--------NNFTSNITASYNIVNGL 585
             T  TL     P   I    N       NP+ + T          F  N + +YN   GL
Sbjct: 433  TTKPTLM----PGDQIYEDENVEYVPADNPYIMATELKDILQQRFFILNASLTYNFGKGL 488

Query: 586  DFKTSFGYNRLDQQEFTSNLAESVAPTARNTFIRSGSYRFTNTNNYIIEPQILYNHQF-S 644
             +K +  +NR D    T     + A  + +     G     N  N ++E  + Y+ +F  
Sbjct: 489  SWKGAGSFNRTDGSRSTYYPIGTNAGNSAHGMAFRGE---DNRQNIVLETTVNYDRKFKK 545

Query: 645  GHKLNFLLGATYNKSQGETSGI-TGSGQSSDSQVKNLSASSSFNQTGSSFYEYRYNAGFF 703
             H +N +LG T+   Q +T  I  G    +D     +   ++     SS  + + ++   
Sbjct: 546  HHHINAVLGYTHEDRQRKTLAIQVGDFAGNDLLYYAIGEGTNTMDKSSSVIQTKLSSFLG 605

Query: 704  RLDYNFKERYLLGLSARRDGSTRFGPDNRFANFWSAAVGWIVSEETLVKEKLPWLNFFKL 763
            R++Y   +RY+   + R DGS+     NR++ F S AV W +++E  +K+ +P ++  KL
Sbjct: 606  RMNYTLYDRYIFTATGRYDGSSLLASGNRWSFFPSFAVAWRINQEKFMKD-IPAISNIKL 664

Query: 764  RANYGLTGSDGVGDYTFMDLYSANTFYLPYQNVVGFAPGRLLNSKLQWEEKRSLNIGFDA 823
            R +YG+TG+  +     + + +    Y       G   G+L N  L WE   + N G D 
Sbjct: 665  RLSYGVTGNQSIAYAAPLAIMNHVRSYSGGAVTHGMVNGKLANPNLGWESTATYNAGLDL 724

Query: 824  NLLNNRVTLGINYNRNRSSNLLQSLNLPVTAGFASVDVNFDALVQNTGWEYTIGVKLLAA 883
              ++NR  + +N  +  + ++L +  LP+++G+ S+  N   +  N G+E      +L  
Sbjct: 725  GFIDNRFRVTMNVYQRTTKDMLMNFGLPLSSGYGSIPYNMGKMT-NKGFELEASADILTG 783

Query: 884  KAFKWNVNANLTVPTNKL--LSLPSLDKVNRVAGFG-----YHI---GLPLGTTTMNTYM 933
            +  KW +  N+ +  NK+  +S   L   + +AG G      HI   G P+G+       
Sbjct: 784  RV-KWTLGGNIYLNRNKVDDISGNELLGTSYLAGGGVFSQSIHITKAGYPVGSFYGYVVD 842

Query: 934  GV---------------NPLTGLEVLEDINGNPVATAGSTANMKTTLRNLYTSPFYAGLQ 978
            GV                   G    +DI+G      G   +   T+       F  G+ 
Sbjct: 843  GVYQNEAEAKLAPFDTPQATPGSLRFKDISGPDGLPDGKITSDDMTIIGTAEPKFNYGIN 902

Query: 979  SSFEYKGLSMNLSF----DFNKQLKPRYFFVSSRPGRDAYNQPEIAYSLNRWENPGDIAV 1034
            S   +KGL++++ F      +     RYF  S     D  N    A+   RW+  G    
Sbjct: 903  SELSWKGLTLSMIFTGRVGGDIANLNRYFLDSFTDTND--NIRAEAWE-GRWQGEGTSNF 959

Query: 1035 IQKYSTLLGSGLLTQTEAFY--EDATYLRLTNIAISWNLPKSWTGIIGMKSSRIGINAQN 1092
                +   GS    +  + +  ED ++ RL N+ +++    S   +  ++S R+     N
Sbjct: 960  YPAVNGSQGSSYFNKRFSTFLLEDGSFFRLKNLTLAYQF--SLKKLRWLRSVRVFGTVTN 1017

Query: 1093 LFTLSKYSGPDP-ITGPSGVMPP 1114
            +FT++ YSG DP ++  SG M P
Sbjct: 1018 VFTITNYSGYDPEVSITSGAMSP 1040