Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 999 a.a., TonB-dependent receptor for dextran (SusC-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  323 bits (829), Expect = 3e-92
 Identities = 276/1016 (27%), Positives = 457/1016 (44%), Gaps = 97/1016 (9%)

Query: 127  QIVVSGKVVDENGSPLSGASVVLKANGKGTSTTVDGTFTMSGVDDGAILVIKYIGFDPKE 186
            QI V G VVD  G P+ GASV+   +  GT T +DG F+++ V   + L I ++G+  + 
Sbjct: 31   QITVKGHVVDATGEPVIGASVIEGKSTNGTITDIDGNFSLN-VSANSALTISFVGYKTQT 89

Query: 187  VKAARELGT-IKLNLATSELDAVQIQAYTTTSKRLSLSNSVSVRAKEIEDQIVSNPLLAL 245
            V    +    + L   T  LD V +  Y T  K        SV  K+I+D  V+N   A+
Sbjct: 90   VSVNGKTALKVTLQEDTEVLDEVVVVGYGTMKKSDLTGAVSSVGVKDIKDSPVANIGQAM 149

Query: 246  QGKVAGIQIQQVSGNAGATINVKIQGVSSFRGNSSPFFVVDGVPYSSTTMVGTGNINLWG 305
            QGKV+G+QI   +G  G  + +KI+G+ +   NS+P  V+DG+P                
Sbjct: 150  QGKVSGVQIID-AGKPGDNVTIKIRGLGTIN-NSNPLVVIDGIP---------------- 191

Query: 306  EATPTALGVAGNNAGISYGSGNPLSFLNPDDIESIDVLKDADATAIYGSRAANGAIVITT 365
                T LG               LS LN  D+E +DVLKDA ATAIYGSR ANG ++IT+
Sbjct: 192  ----TDLG---------------LSSLNMADVERVDVLKDASATAIYGSRGANGVVMITS 232

Query: 366  KRGKPGTLQIDFSSRNGWNQATFGADFLNTEQYLGIRNEAYRNSNAVISATNYDLNGIWD 425
            KRG  G  ++  ++      AT   D LN  QY  + N+   N++   +    D + +  
Sbjct: 233  KRGAEGAGKVTVNANWAIQNATKVPDMLNAAQYAALSNDMLSNNDDNTNPYWADPSSLG- 291

Query: 426  KEKFTDWQKELIKTTGYDDASLSVSGGTLNSSYRLNLTGNRQNSAYAR--NFRNDNIALS 483
              K T+W  E+++T      S+S SGGT  + Y ++  G    S   +  N+R  N   +
Sbjct: 292  --KGTNWLDEMLRTGVKQSYSVSYSGGTEKAHYYVS-GGFLDQSGIVKSVNYRRFNFQAN 348

Query: 484  ISLNTASANQKFKLGIVGNYLNGFNNLPSLNQTTAGSFLYLLPPNAPNLYNTDGTLNWDM 543
               + A  N+  K       L    ++      + G  +  LP     + N DG+ +   
Sbjct: 349  ---SDAQVNKWLKFT---TNLTFSTDVKEGGTYSIGDAMKALPTQP--VKNDDGSWSGPG 400

Query: 544  DPTGTISRFRNPLSTYLTNPFEVKTNNFTSNITASYNIVNGLDFKTSFGYNRLD--QQEF 601
                     RNP+ T      E K  NF +NIT        L  K++FGY+        F
Sbjct: 401  QEAQWYGSIRNPIGTLHMMTNETKGYNFLANITGEITFTKWLKLKSTFGYDAKFWFADNF 460

Query: 602  TSNLAESVAPTARNTFIRSGSYRFTNTNNYIIEPQILYNHQFSG-HKLNFLLGATYNKSQ 660
            T        P   ++  +S +  FT    Y+ +   +++H F+  H++  + G++   + 
Sbjct: 461  TPAYDWKPNPVEESSRYKSDNKSFT----YLWDNYFVFDHTFAKKHRVGVMAGSSAQWNN 516

Query: 661  GETSGITGSGQSSDSQVKNLSASSSFNQTGSSFYEYRYNAGFFRLDYNFKERYLLGLSAR 720
             +      +    D+ +  +         G S  ++   +   RL+Y+++++YLL  + R
Sbjct: 517  YDYLNAQKNIFMFDN-IHEMDNGEKMYSLGGSQSDWALLSLMARLNYSYEDKYLLTATVR 575

Query: 721  RDGSTRFGPDNRFANFWSAAVGWIVSEETLVKEKLPWLNFFKLRANYGLTGSDGVGDYTF 780
            RDGS+RFG +NR+  F S ++ W VS+E    +    +N  KLR  YG+TG+  +G+Y F
Sbjct: 576  RDGSSRFGKNNRWGTFPSVSLAWRVSQEDWFPKDNFLMNDLKLRVGYGVTGNQEIGNYGF 635

Query: 781  MDLYSANTFYLPYQNVVGFAPGRLLNSKLQWEEKRSLNIGFDANLLNNRVTLGINYNRNR 840
            +  Y+   +     N        L N  + WEE R  N G D +L ++RV+L ++     
Sbjct: 636  VASYNTGVYPFGNNNSTALVSTTLSNPNIHWEEVRQANFGVDMSLFDSRVSLSLDAYIKN 695

Query: 841  SSNLLQSLNLPVTAGFASVDVNFD--ALVQNTGWEYTIGVKLLAAKAFKWNVNANLTVPT 898
            ++++L   ++P+T+GF      F     ++N G E T+    L    F W      T   
Sbjct: 696  TNDMLVKASIPITSGFEDTTETFTNAGKMRNKGVEMTLRTINLKG-IFSWESALTATYNK 754

Query: 899  NKLLSLPSLDK--VNRVAG-------FGYHIGLPLGTTTMNTYMGVNPLT---------- 939
            N++L L S     +N++          GY I +  G  T   +     +           
Sbjct: 755  NEILDLNSETPMFINQIGNSYVTMLKAGYPINVFYGYVTDGLFQNWGEVNRHATQPGAAP 814

Query: 940  GLEVLEDINGNPVATAGSTANMKTTLRNLYTSPFYAGLQSSFEYKGLSMNLSFDFNKQLK 999
            G     D+N + V         +T L N   + F++ L ++  YKG  +++   F + + 
Sbjct: 815  GDIRFRDLNNDGVINDED----RTILGNPNPNWFFS-LSNNLSYKGWELSV---FLQGVA 866

Query: 1000 PRYFFVSSRPGRD----AYNQPEIAYSLNRWENPGDIAVIQKYSTLLGSGLLTQTEAFYE 1055
                + ++    +    AYNQ      LNRW   G    + +      +     ++ F E
Sbjct: 867  GNKIYNANNVDNEGMAAAYNQTTAV--LNRWTGEGTSYSMPRAIWGDPNQNCRVSDRFVE 924

Query: 1056 DATYLRLTNIAISWNLPKSWTGIIGMKSSRIGINAQNLFTLSKYSGPDPITGPSGV 1111
            + +YLRL NI +S+ LPK W   I ++++RI  + +N+ T+++YSG DP    +G+
Sbjct: 925  NGSYLRLKNITLSYTLPKKWLQKIQLENARISFSCENVATITRYSGFDPEVDVNGI 980