Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1134 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  319 bits (818), Expect = 7e-91
 Identities = 286/1173 (24%), Positives = 507/1173 (43%), Gaps = 120/1173 (10%)

Query: 18   RMLMIMKLTTTILISALLQVSAAGMAQHLTLNKKNVSLAQVFKEIRKQTGYSILWESEKF 77
            R++ I+     + +  LL + +     H+T+   ++++ QV  EI KQT Y  ++  +  
Sbjct: 18   RIMKIIVYVCFLCVGNLLAIGSYAQTAHVTIVSNHITIGQVINEIEKQTDYLFVFNVKDI 77

Query: 78   DANGKVSVEFKNSSLKEVLNFIINSDKYSYLIDEKTIVI---QPKDKYELNDQIVVSGKV 134
            +    V V  K+ ++ EVLN I       + I+ K I++     K+K       +V+G V
Sbjct: 78   NIKRNVKVNAKDKAVNEVLNDIFKDTGIRHAIEGKNIMLINSTDKEKGAQQKDFLVTGIV 137

Query: 135  VDENGSPLSGASVVLKANGKGTSTTVDGTFTMSGVDDGAILVIKYIGFDPKEVKAARELG 194
             DENG P+ GA++ +     GT T ++G F++S     + L I YIG+  + V    +  
Sbjct: 138  KDENGEPIIGANIQVVGKSAGTITDMNGRFSISA-SANSTLQITYIGYQTQTVNIGEQRN 196

Query: 195  -TIKLNLATSELDAVQIQAYTTTSKRLSLSNSVSVRAKEIEDQIVSNPLLALQGKVAGIQ 253
              I L    ++LD V +  Y T  K+    +  +V+  E+  +  +    ALQG ++G+ 
Sbjct: 197  INIILQEDNAQLDEVVVVGYGTMKKKDLTGSVTAVKGDELAARRTTQLSTALQGALSGVM 256

Query: 254  IQQVSGNAGATINVKIQGVSSFRGNSSPFFVVDGVPYSSTTMVGTGNINLWGEATPTALG 313
            + + +G  G++ +++I+GV++  G+SSP  ++DG+P         G+IN           
Sbjct: 257  VSRDNGAPGSSASIQIRGVTTI-GDSSPLVIIDGIP---------GDINS---------- 296

Query: 314  VAGNNAGISYGSGNPLSFLNPDDIESIDVLKDADATAIYGSRAANGAIVITTKRGKPGTL 373
                              +NP+D+ES+ VLKDA + +IYGSRAA G IVITTKR K G +
Sbjct: 297  ------------------VNPEDVESMSVLKDAASASIYGSRAAAGVIVITTKRAKSGDV 338

Query: 374  QIDFSSRNGWNQATFGADFLNTEQYLGIRNEAYRNSN---------AVISATNYDLNGIW 424
             + ++   GW   T    ++  ++Y+ + NE   N N              TN+ +N   
Sbjct: 339  ALSYNFEYGWEIPTKLPTYVGAQRYMEMVNETRYNDNPDGGWYQTYTEDEITNWSINNAT 398

Query: 425  DKEKF--TDWQKELIKTTG-YDDASLSVSGGTLNSSYRLNLTGNRQNSAYARNFRNDNIA 481
            + +K+  TDW   L+K++      +LS+ GG      + +   ++ +  Y  N   D   
Sbjct: 399  NPDKYPMTDWGDILLKSSAPRQTHTLSIVGGGKIIRTKASFRYDKTDGLYV-NKEYDRFM 457

Query: 482  LSISLNTASANQKFKLGIVGNYLNGFNNLPSLNQTTAGSFLYLLPPNAPNLYNTDGTLNW 541
            + ++ N  + N+     +  N+       P+ N   AG        N P +Y       W
Sbjct: 458  VRVN-NDFNINKYISANLDLNFSRSKALSPNSNPMGAGG------RNIPPIY----AATW 506

Query: 542  DMDPTGTISRFRNPLSTYLT-NPFEVKTNNFTSNITASYNIVNGLDFKTSF--GYNRLDQ 598
                 G +    N L+       F     N    +      VNGL    +    +N + +
Sbjct: 507  TNGLWGDVKDGENMLAKITDGGTFTNWGTNIGGKLGIDITPVNGLKISAAVAPNFNNVKK 566

Query: 599  QEFTSNLAESVAPTARNTFIRSGSYRFTN-----TNNYIIEPQILYNH--QFSGHKLNFL 651
            + F   +  + +     T    G YR TN      +++ I  Q   N+      H  + +
Sbjct: 567  KTFVKQIPYTRSEDPNTTVGYMGGYRTTNLTENRNDSHDITTQFFANYAKTLGRHDFSVM 626

Query: 652  LGATYNKSQGETSGITGSGQSSDSQVKNLSASSSFNQTGSSFYEYRYNAGFFRLDYNFKE 711
            +G     +  E    +       S       S  +   G +  EY Y + F R+ Y++ +
Sbjct: 627  IGYEDYYAFWENLDASRDQYQLTSYPYLDLGSEDYRDNGGNAEEYAYRSLFGRMTYSYAD 686

Query: 712  RYLLGLSARRDGSTRFGPDNRFANFWSAAVGWIVSEETLVKE-KLPWLNFFKLRANYGLT 770
            RYL+  + RRDGS+RF  + R+ANF S ++GW++SEE   K   + W ++ KLR ++G  
Sbjct: 687  RYLIQANLRRDGSSRFASNCRWANFPSVSLGWVISEEKFFKNINMDWFSYLKLRGSWGKL 746

Query: 771  GSDGVGDYTFMDLYSANTFYLPYQNVVGFAPGRLLNSK------------------LQWE 812
            G++ +G Y     +  N  Y PYQ  + ++     NS+                  + WE
Sbjct: 747  GNERIGAYDDDGNFIYN--YYPYQAAIDYSTALFQNSQGIVSSVTTAAQQKYAVRDISWE 804

Query: 813  EKRSLNIGFDANLLNNRVTLGINYNRNRSSNLLQSLNLPVTAGFASVDVNFDALVQNTGW 872
               S +IG DAN L+NR+    +Y R  + ++L +L +P   G+ + +VN   +   TG+
Sbjct: 805  TTESWDIGLDANFLDNRLHFSADYYRKNTKDMLLALEIPHFIGYDNPEVNAGNM-HTTGY 863

Query: 873  EYTIGVKLLAAKAFKWNVNANLTVPTNKLLSLPS---LDKVNRVAGFGYH---------I 920
            +  +G +      F ++++ANL+  T+K+ +L     L    ++ G  Y+         +
Sbjct: 864  DIEVGWRDKVGD-FTYSISANLSDFTSKMGNLNGTQFLGNQVKMEGSEYNEWYGYVSDGL 922

Query: 921  GLPLGTTTMNTYMGVNPLTGLEVLEDINGNPVATAGSTANMKTTLRNLYTSPFYA-GLQS 979
             L       +  +  +   G    +DI+G      G  +     +    + P Y  GL  
Sbjct: 923  FLTQEDVDKSPKLNNSVKVGDIKYKDISGPDGVPDGVISPEYDRVLLGGSLPHYMFGLTF 982

Query: 980  SFEYKGLSMNLSFDFNKQLKPRYFFVSSRPGRDAYNQPEIAYSLNRW--ENPGDIAVIQK 1037
            +  YKG    L+       K +         RD +         N W  +N  +     K
Sbjct: 983  NAAYKGWDFGLTLQGVGSQKSQISAAMIEGLRDNWLNFPTILDGNYWSPKNTDEQNATAK 1042

Query: 1038 YSTLLGSGL---LTQTEAFYEDATYLRLTNIAISWNLPKSWTGIIGMKSSRIGINAQNLF 1094
            Y  L  +        ++ +  +  Y+RL N+++ + LPK+WT    M + R+ ++  +LF
Sbjct: 1043 YPRLTRTNRDANFCMSDYWLYNGRYIRLKNLSVGYTLPKAWTTKACMNTVRLYVSGSDLF 1102

Query: 1095 TLSKY-SGPDPITGPSGVMPPMRVIVLNVRASF 1126
            T+S    G DP     G  P    ++  V  +F
Sbjct: 1103 TISNAPKGWDPEVSTEG-YPITTSLIFGVSINF 1134