Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1025 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  349 bits (895), Expect = e-100
 Identities = 300/1047 (28%), Positives = 473/1047 (45%), Gaps = 85/1047 (8%)

Query: 122  YELNDQIVVSGKVVD-ENGSPLSGASVVLKANG-KGTSTTVDGTFTMSGVDDGAILVIKY 179
            Y    Q+ +SG V+  E+  PL GA+V +K N  KG  T ++G F +S      +LV+ Y
Sbjct: 22   YASAQQLNISGVVISSEDNEPLIGATVSVKGNPTKGVITDINGQFQLSVETGTKLLVVSY 81

Query: 180  IGFDPKEVKAARELGTIKLNLA--TSELDAVQIQAYTTTSKRLSLSNSVSVRAKEIEDQI 237
            +G   +E++  R+   +K+ L   T ++D V +  Y   SK     ++ ++R   +++  
Sbjct: 82   VGMKTQEIRVPRKEKELKIVLIPETMDIDEVVVTGYGNFSKSSFTGSANTLRTDMLKEVP 141

Query: 238  VSNPLLALQGKVAGIQIQQVSGNAGATINVKIQGVSSFRGNSSPFFVVDGVPYSSTTMVG 297
            V +    LQG   G+QI   SG  GA  +++I+G+ SF  +  P FV+DGVP +S +M  
Sbjct: 142  VMSVEQKLQGMTTGVQITSSSGQPGANQSIRIRGMGSFNASQEPLFVIDGVPVTSGSMSS 201

Query: 298  TGNINLWGEATPTALGVAGNNAGISYGSGNPLSFLNPDDIESIDVLKDADATAIYGSRAA 357
             G         P A       A ++    N +S LNP DIE++ V+KDA A ++YGSRAA
Sbjct: 202  GG---------PDA-------AYMNNSKTNIMSTLNPSDIENVTVIKDAAAASLYGSRAA 245

Query: 358  NGAIVITTKRGKPGTLQIDFSSRNGWNQATFGADF---LNTEQ-----YLGIRNEAYRNS 409
            NG I+ITTK+G  G +++D +   G++ A    DF   LN +Q     Y G+ N  Y   
Sbjct: 246  NGVILITTKKGNTGKVRVDLNVSGGFSHAA--VDFRPTLNGDQREELLYEGLLN--YATD 301

Query: 410  NAVISATNYDLNGIWDKEK-----FTDWQKELIKTTGYDDASLSVSGGTLNSSYRLNLTG 464
            N + S T Y  + I          +TDW+KEL++T  +     SVSGG   S++  +L  
Sbjct: 302  NGMESPTEYASSNIGTYAYKPAMGYTDWRKELLRTAMHQSYEASVSGGNDRSTFYASLGY 361

Query: 465  NRQNSAYARNFRNDNIALSISLNTASANQKFKLGIVGNYLNGFNNLPSLNQTTAGS---F 521
            N Q    A+N   D  +  +++         K G VG  +        +N+    S   F
Sbjct: 362  NNQEGL-AKNSSLDRYSARLNVTQKVG----KYGEVGANMMFSQMNQEMNEERGSSINPF 416

Query: 522  LYLLPPNAPNLYNTDGTLNWDMDPTGTISRFRNPLSTYLTNPFEVKTNNFTSNITASYNI 581
            L +     P++   D   N+     GT     NPL   LT+   V+     S   A+   
Sbjct: 417  LCVAMTMTPSMVVRDEEGNYVGAYDGTSL---NPLRDILTDYNRVRMTRMFSTGYAAIEP 473

Query: 582  VNGLDFKTSFGYNRLDQQE--FTSNLAESVAPTARNTFIRSGSYRFTNTNNYIIEPQILY 639
            + GL  K +  Y+   Q++  + + L+ +   +  +     G   F      I    + Y
Sbjct: 474  IKGLKLKETLSYDYTIQKDSRYYNPLSSAGPKSGSDAQTAKG---FIEYGKLISSTSLNY 530

Query: 640  NHQFSG-HKLNFLLGATYNKSQGETSGITGSGQSSDS-QVKNLSASSSFNQTGSSFYEYR 697
               F+  H L+ L  A Y     +T   +G      S ++     ++  N   S+   YR
Sbjct: 531  VRTFARKHHLDVL--AAYEIESYQTDHASGEKSKLPSDKLTEPDNAAVLNSFKSATQAYR 588

Query: 698  YNAGFFRLDYNFKERYLLGLSARRDGSTRFGPDNRFANFWSAAVGWIVSEETLVKEKLPW 757
              +   RL+Y++ +RY +  S RRDGS+R  P+NR+ NFWS +  W +  E  +K   P 
Sbjct: 589  MISYLSRLNYDYDDRYYIAGSYRRDGSSRLSPNNRWGNFWSVSGMWHLGNENFMKAVKPV 648

Query: 758  LNFFKLRANYGLTGSDGVGDYTFMDLYSANTFYLPYQNVVGFAPGRLLNSKLQWEEKRSL 817
            L+  K+RA+YG+ G+     Y +  LYS    Y+      G       N  L WE+  SL
Sbjct: 649  LSDVKIRASYGVNGNQPGSYYGYKGLYSYGENYM---EAAGSYESAQPNDLLTWEKNYSL 705

Query: 818  NIGFDANLLNNRVTLGINYNRNRSSNLLQSLNLPVTAGFASVDVNFDALVQNTGWEYTIG 877
            N+G D + + NR+   + Y    + +LL SL +  T GF S   N   L  N G E+ + 
Sbjct: 706  NLGIDLSFI-NRIFASLEYYNRDTKDLLYSLPISATTGFTSYLSNIGRL-NNKGVEFELR 763

Query: 878  VKLLAAKAFKWNVNANLTVPTNKLLSLPS-LDKVNRVAGFGYHIGLPLGTTTMNTYMGVN 936
               + +  F W    NL+   NK++SL   LD+      F + +GLP  T  +  + GV+
Sbjct: 764  TLNVVSNDFNWTSVFNLSHNRNKIVSLNGLLDQTIEGTWFIHKVGLPYHTFYVKEFAGVD 823

Query: 937  PLTGLEVL------EDINGNPVATAGSTANMKTTLRNLYTSPFYAGLQSSFEYKGLSMNL 990
            PLTG          ED + N   T    A  ++      T     G  +   YK + +  
Sbjct: 824  PLTGSAQYYLNTKNEDGSYNRELTT-DAAKAESIPYKTATPKVSGGFTNILNYKWIDLTF 882

Query: 991  SFDFN------KQLKPRYFFVSSRPGRDAYNQPEIAYSLNRWENPGDIAVIQKYSTLLGS 1044
            +  ++       +L       SS      YN P  AY +NRW+ PGD   I ++  + G 
Sbjct: 883  TLTYSLGGYSFDKLGTYIENGSSSIYSSRYNLP--AYMMNRWQKPGDQTDIPRF--VYGE 938

Query: 1045 -GLLTQTEAFYEDATYLRLTNIAISWNLPKSWTGIIGMKSSRIGINAQNLFTLSKYSGPD 1103
                T +  +     +LRL N  + + LP  WT  + +   R+  +  NL T +K+   D
Sbjct: 939  PATSTNSSRYIHSTDHLRLKNFTLGFTLPNQWTQKLMIDKVRVYFSGNNLLTWAKWKQYD 998

Query: 1104 PITGPSGVM----PPMRVIVLNVRASF 1126
            P T  +G +    P MR      + SF
Sbjct: 999  PETPVNGEVFCEAPAMRTFSFGAQLSF 1025