Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1042 a.a., TonB-dependent receptor for vancomycin (SusC-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  307 bits (787), Expect = 2e-87
 Identities = 286/1094 (26%), Positives = 461/1094 (42%), Gaps = 178/1094 (16%)

Query: 130  VSGKVVDENGSPLSGASVVLKANGKGTSTTVDGTFTMSGVDDGAILVIKYIGFDPKEVKA 189
            V+G V  E G PL G SV +K    GT T +DG +++    +G I V +++G    E   
Sbjct: 30   VTGTVTSE-GEPLPGVSVQVKGASSGTITDIDGNYSIEAPANGTI-VFRFVGLRTVEQAV 87

Query: 190  A-RELGTIKLNLATSELDAVQIQAYTTTSKRLSLSNSVSVRAKEIEDQIVSNPLLALQGK 248
              R +  + +   + EL+ V + AY T  K      + +++A EIE    S+    L+G 
Sbjct: 88   NNRNVINVTMESESKELEEVMVVAYATAKKYSFTGAASTMKAGEIEKLQTSSVSRVLEGT 147

Query: 249  VAGIQIQQVSGNAGATINVKIQGVSSFRGNSSPFFVVDGVPYSSTTMVGTGNINLWGEAT 308
            V+G+Q    SG  G    ++I+G+ S   +S+P +VVDGVP+        G++N      
Sbjct: 148  VSGVQASASSGQPGTDAEIRIRGIGSINASSAPLYVVDGVPFD-------GSVNS----- 195

Query: 309  PTALGVAGNNAGISYGSGNPLSFLNPDDIESIDVLKDADATAIYGSRAANGAIVITTKRG 368
                                   +NPDDI S+ VLKDA + A+YGSR ANG I+ITTK+G
Sbjct: 196  -----------------------INPDDIASMTVLKDAASAALYGSRGANGVIIITTKQG 232

Query: 369  KP---GTLQIDFSSRNGWNQATFGADFLNTEQYLGIRNEAYRNSNAVIS----------- 414
            +     T+++  ++  G ++A    D +NT QY  +  EA RN  A  S           
Sbjct: 233  QQDSKATVKVK-ATLGGSSRAVRDYDRVNTNQYFELYWEALRNQYAKSSDYTPATAATQA 291

Query: 415  ----------------ATNYD------------LNGIWDKEKFTDWQKELIKTTGYDDAS 446
                             T Y                +W+    +DW   + +     + +
Sbjct: 292  SKDLVTKLMGGGPNPYGTQYPQPVGTDGKLAAGARPLWN----SDWSDAMEQQALRTELN 347

Query: 447  LSVSGGTLNSSY-----RLNLTGNRQNSAYARNFRNDNIAL--------SISLNTASANQ 493
            LSVSGG   + Y      LN  G    S Y R     N+          SI+L+ A + Q
Sbjct: 348  LSVSGGGKANQYFFSAGYLNDKGIALESGYQRFNLRSNVTSEMTSWLKGSINLSFAHSMQ 407

Query: 494  KFKLG---------IVGNYLNGFNNLPSLNQTTAGSFLYLLPPNAPNLYNTDGTLNWDMD 544
             + +            G  + GF  +  +N  T GS  Y L  N   +Y+          
Sbjct: 408  NYPVSSDSKTSNVITAGRTMPGFYPICEMN--TDGS--YKLDDNGDRIYDFGS-----YR 458

Query: 545  PTGTISRFRNPLSTYLTNPFEVKTNNFTSNITASYNIVNGLDFKTSFGYNRLDQQ--EFT 602
            P+G+++ +  P +  L     +K + F+        I+ GL FKTSF ++ ++    ++T
Sbjct: 459  PSGSMANWNLPATLPLDKSERMK-DEFSGRTYLEATIIEGLKFKTSFNFDLINYNTLDYT 517

Query: 603  SNLAESVAPTARNT--FIRSGSYRFTNTNNYIIEPQILYNHQFSGHKLNFLLGA-TYNKS 659
            +     + P   N     R  S  F+ T N I      Y+     H  N L G   Y+  
Sbjct: 518  N---PKIGPALENGGGSSRLNSRTFSWTWNNIAS----YDKTIGDHHFNVLAGMEAYSYR 570

Query: 660  QGETSGITGSGQSSDSQVKNLSASSSFNQTGSSFYEYRYN-AGFF-RLDYNFKERYLLGL 717
              E +      + +   +  L   S    TG S Y   Y   G+  +  Y+++ +Y    
Sbjct: 571  YDELTA--SRTKMAQPDMPELVVGSQL--TGGSGYRIDYALVGYLTQALYDYQNKYFFSA 626

Query: 718  SARRDGSTRFGPDNRFANFWSAAVGWIVSEETLVKEKLPWLNFFKLRANYGLTGSDGVGD 777
            S RRDGS+RF P+ R+ NFWS    W +  E+ +     WL+   L+ +YG  G+D +G 
Sbjct: 627  SFRRDGSSRFAPETRWGNFWSLGTSWRIDRESFMASTANWLSALTLKMSYGAQGNDNLGT 686

Query: 778  YTFMDLYSANTFYLPYQNV--VGFAPGRLLNSKLQWEEKRSLNIGFDANLLNNRVTLGIN 835
            Y     Y++   Y    N+        R+    L+WE   + N+G D +L NNR +   +
Sbjct: 687  Y-----YASKGLYTIVSNLGENALVSDRMATPNLKWETNLNFNVGVDFSLFNNRFSGSFD 741

Query: 836  YNRNRSSNLLQSLNLPVTAGFASVDVNFDALVQNTGWEYTIGVKLLAAKAFKWNVNANLT 895
            +   RS +LL S  +  + G+ S+D N  AL +NTG E  +   ++    + W +  NLT
Sbjct: 742  FFTRRSKDLLYSRPIAPSLGYGSIDENVGAL-KNTGIEMVLNGTIINQNGWVWKLGMNLT 800

Query: 896  VPTNKLLSLPSLDK----VNRVAGFGYHIGLPLGTTTMNTYMGVNPLTG--------LEV 943
               NK+  LP  D     VN++      +G  +    M  + GV+P  G         + 
Sbjct: 801  HYKNKVTELPLKDMPQSGVNKL-----QVGRSVYDFYMKEWAGVDPDNGNPLWYMDEKDA 855

Query: 944  LEDINGNPVATAGSTANMKTTLRNLYTSPFYAGLQSSFEYKGLSMNLSFD-------FNK 996
             +++ G  V T+   +     +        Y G  +S  +KG  ++  F        +N+
Sbjct: 856  NDNLTGKRVTTSDYASANYYYVNKSSLPKVYGGFNTSLSWKGFDLSAIFAYSIGGYIYNR 915

Query: 997  QLKPRYFFVSSRPGRDAYNQPEIAYSLNRWENPGDIAVIQKYSTLLGSGLLTQTEAFYED 1056
             +        S  GRD   +      L RW        +   ST   +     T  F ++
Sbjct: 916  DI-TMILHNGSLEGRDWSTE-----ILKRWTPENRYTDVPALSTTSNNWNSASTR-FLQN 968

Query: 1057 ATYLRLTNIAISWNLPKSWTGIIGMKSSRIGINAQNLFTLSKYSGPDPITGPSGV----M 1112
             +Y+RL N+ +S++LPK W   + + S ++ +   NLFT+ +  G DP  G +G+     
Sbjct: 969  NSYMRLKNLTLSYDLPKQWISKLALSSVQVFVQGDNLFTIHRNQGLDPEQGITGITYYRY 1028

Query: 1113 PPMRVIVLNVRASF 1126
            P MR I   +  SF
Sbjct: 1029 PAMRTISGGINLSF 1042