Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 980 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  305 bits (782), Expect = 9e-87
 Identities = 278/1040 (26%), Positives = 454/1040 (43%), Gaps = 130/1040 (12%)

Query: 130  VSGKVVD-ENGSPLSGASVVLKANGKGTSTTVDGTFTMSGVDDG-AILVIKYIGFDPKEV 187
            V G VV  E+  P+ G S++ K    G  T +DG +T+       A L+  YIG   +  
Sbjct: 28   VKGHVVSAEDNEPMVGVSILEKGTTNGVITDIDGNYTLEIKGTASATLLFSYIGMQSQAH 87

Query: 188  KAARELGTIKLNLATSE--LDAVQIQAYTTTSKRLSLSNSVSVRAKEIEDQIVSNPLLAL 245
              + + GT+ + L +    +D V + AY T  K        +V+A+++E+   +    +L
Sbjct: 88   AVSAKTGTLNVRLVSDAALIDEVVVVAYGTRKKGTIAGAVSTVKAEKLENVPAAGFDQSL 147

Query: 246  QGKVAGIQIQQVSGNAGATINVKIQGVSSFRGNSSPFFVVDGVPYSSTTMVGTGNINLWG 305
            QG+  G+ +   SG        +++G +S    +SP F++DG P SS             
Sbjct: 148  QGQTPGLTVISNSGEPSKAAVFQLRGTNSINSGTSPLFILDGTPISSADF---------- 197

Query: 306  EATPTALGVAGNNAGISYGSGNPLSFLNPDDIESIDVLKDADATAIYGSRAANGAIVITT 365
                                    + ++P DIESI VLKDA +T+IYG+RAANG +VIT+
Sbjct: 198  ------------------------NTISPGDIESISVLKDASSTSIYGARAANGVVVITS 233

Query: 366  KRGKPGTLQID---FSSRNGWNQATFGAD----FLNTEQYLGIRNEAYRNSNAVISATNY 418
            KRG    L ID    + R  W  +   ++     +NT + +    E       + +  +Y
Sbjct: 234  KRG----LAIDKAKVTLRAQWGISQLASNDKWVVMNTPERIQFEKEI-----GLDTGQDY 284

Query: 419  DL----NGIWDKEKFTD----WQKELIKTTGYDDASLSVSGGTLNSSYRLNLTGNRQNSA 470
            DL    N  W  E F D       EL      D  +  VSGG  +        G  Q+S+
Sbjct: 285  DLLSRTNVNWLDEVFNDRAPLQSYELSVNRATDRLNYYVSGGFYDQE------GIAQSSS 338

Query: 471  YARNFRNDNIA------LSISLNTASANQKFKLGIVGNYLNGFNNLPSLNQTTAGSFLYL 524
            + R     N        L +  NT  A ++      G         P+L    +GS  ++
Sbjct: 339  FRRYNMRANAEVKASNWLKVGTNTMMAYEEISQAEEGE--------PALYTPISGS-RFM 389

Query: 525  LPPNAPNLYNTDGTLNWDMDPTGTISRFRNPLSTYLTNPFEVKTNNFTSNITASYNIVNG 584
            LP   P  YN DG+L  + D T T    +NP+     NP   K     S + A    +  
Sbjct: 390  LPYWNP--YNADGSLASENDGTWT-GTGQNPIEWMANNPVSYKKYKLLSTVFAEITPIQN 446

Query: 585  LDFKTSFGYNRLDQQEFTSNLAESVAPTARNTFIRSGSYRFTNTNNYIIEPQILYNHQFS 644
            L  +  FG +      F  +    +          SG    ++++   +   +  N++++
Sbjct: 447  LTIRGQFGADYSHSTAFMQSFPSYIINN------NSGKAGRSSSDILSLSETLTANYRWA 500

Query: 645  ---GHKLNFLLGATYNKSQGETSGITGSGQSSDSQVKNLSASSSFNQTGSSFYEYRYNAG 701
                H  NFLLG      Q     ++  GQ++D ++ NL   +       S   Y Y + 
Sbjct: 501  LNDDHSFNFLLGQEGIDYQSSGFQVSTQGQNND-RLTNLLTGTRATSWPDSNSAYSYLSF 559

Query: 702  FFRLDYNFKERYLLGLSARRDGSTRFGPDNRFANFWSAAVGWIVSEETLVKEKLPWLNFF 761
            FFR +YN+K+ Y   ++AR D S+RFG D+R+  FWS    W +  E  +K+ + WL   
Sbjct: 560  FFRGEYNYKDLYYAEVAARTDASSRFGADHRWGMFWSLGFMWNIKNEAFLKD-IEWLTSA 618

Query: 762  KLRANYGLTGSDGVGDYTFMDLYSANTFYLPYQNVVGFAPGRLLNSKLQWEEKRSLNIGF 821
            +++ + G +G+  +  Y  + L S +     Y +  G  P +  N +L WE+  + N+G 
Sbjct: 619  QVKLSTGTSGNSEIPYYDHLALVSGDA---NYNDEAGIYPSQSGNEELSWEQTWANNVGV 675

Query: 822  DANLLNNRVTLGINYNRNRSSNLLQSLNLPVTAGFASVDVNFDAL--VQNTGWEYTIGVK 879
               L  NRV + +++   +++N+L  + +P +     V   +D +  + N G E  I   
Sbjct: 676  SFGLY-NRVNVNVDFYHKKTTNML--MLVPQSYAITGVGNRWDNIGAMMNRGVEIAIDGD 732

Query: 880  LLAAKAFKWNVNANLTVPTNKLLSLPS--LDKVNRVAGFGYHIGLPLGTTTMNTYMGVNP 937
            ++  K F WN++AN++   NKLL L +   + VN   G  Y +G  +    MN Y GVNP
Sbjct: 733  VIRTKDFTWNLSANVSYNKNKLLELYNGVEEYVNSTTGLKYVVGHSVREYFMNRYAGVNP 792

Query: 938  LTGLEVLEDINGNPVATAGSTANMKTTLRNLYTSPFYAGLQSSFEYKGLSMNLSFDFNKQ 997
              G  +    +G    T       K      + SP+  G  +S  +KGLS++  F +   
Sbjct: 793  ANGDALWYTADGE--LTTEFREEDKVMTGKSFDSPWVGGFGTSLMWKGLSLSAQFSW--- 847

Query: 998  LKPRY------FFVSSRPGRDAYNQPEIAYSLNRWENPGDIAVIQKYSTLLGSGLLTQ-T 1050
            +  RY      FF  S     AYNQ +     +RW+ PGDI  I +Y      G+  Q  
Sbjct: 848  MAKRYVMNNDRFFEESNGLYSAYNQSK-RLLYDRWKKPGDITDIPRY------GVTAQLD 900

Query: 1051 EAFYEDATYLRLTNIAISWNLPKSWTGIIG-MKSSRIGINAQNLFTLSKYSGPDPITGPS 1109
            + F E++++LRL N+ +++  P+S         S+R+ +  QNL T + ++G DP    +
Sbjct: 901  DRFLENSSFLRLKNLTLAYAFPQSLLKKTNFFTSARVYLQGQNLLTWTGFTGLDPEVATN 960

Query: 1110 ---GVMPPMRVIVLNVRASF 1126
                  P  R   L +  SF
Sbjct: 961  VYRAQYPASRQFTLGIDVSF 980