Pairwise Alignments

Query, 1126 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1146 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  342 bits (876), Expect = 1e-97
 Identities = 286/1142 (25%), Positives = 517/1142 (45%), Gaps = 128/1142 (11%)

Query: 45   HLTLNKKNVSLAQVFKEIRKQTGYSILWESEKFDANGKVSVEFKNSSLKEVLNFIINSDK 104
            ++TL  +N  +  VF +I +QT +  +++ E  +    VS + KN++LK++L  I    K
Sbjct: 40   NITLRVQNEPVENVFNKISEQTNFKFIYDQETVNNAPHVSFDVKNATLKQILGVITTQSK 99

Query: 105  YSYLIDEKTIVI--QPKDKYELNDQIVVSGKVVDENGSPLSGASVVLKANGKGTSTTVDG 162
              +   + TI +  QP  +        V G VVD+ G P+ GASV +K  G GT T +DG
Sbjct: 100  LYFNRTDNTIAVSKQPLKEESAQRTRTVQGVVVDDKGEPVIGASVQIKGEGSGTITDMDG 159

Query: 163  TFTMSGVDDGAILVIKYIGFDPKEVKAARELGTIKLNLATSE--LDAVQIQAYTTTSKRL 220
             +++  V + A L I YIG+    + +A++  T K+ L      +D V +  Y    KR 
Sbjct: 160  RYSLMNVPESATLTISYIGYKTVSL-SAKDKNTAKITLTEDSKMIDEVVVVGYGVQRKRD 218

Query: 221  SLSNSVSVRAKEIEDQIVSNPLLALQGKVAGIQIQQVSGNAGATINVKIQGVSSFRGNSS 280
              ++  SV+A++I +   S+   AL GK+ G+Q+ Q SG+   +++++++G+S+    S 
Sbjct: 219  VSTSISSVKAEQIAEVSASDFRQALAGKMPGVQVTQPSGDPEGSVSIRVRGISTVNAGSD 278

Query: 281  PFFVVDGVPYSSTTMVGTGNINLWGEATPTALGVAGNNAGISYGSGNPLSFLNPDDIESI 340
            P +++DGVP                               +  G  N    LN +D+ES+
Sbjct: 279  PLYIIDGVP-------------------------------VERGFAN----LNNNDVESV 303

Query: 341  DVLKDADATAIYGSRAANGAIVITTKRGKPGTLQIDFSSRNGWNQATFGADFLNTEQYLG 400
            +VLKDA + AIYGSR +NG I+ITTK+G+   +++ +    G    +     LN  Q+  
Sbjct: 304  EVLKDASSAAIYGSRGSNGVIIITTKQGQSEKMKVQYDGYYGIQSISKKLPMLNAYQFAE 363

Query: 401  IRNEAYRNS--NAVISATNYDLNGI----WDK---EKF-----------TDWQKELIKTT 440
               + + NS  +A    +  D NG+    W++   E F           TDWQ  + ++ 
Sbjct: 364  FAKDGHDNSYLDANPGGSPNDPNGMRPNSWERIPTELFPYLNGDQGLTDTDWQDAIFRSA 423

Query: 441  GYDDASLSVSGGTLNSSYRLNLT-GNRQNSAYARNFRNDNIALSISLNTASANQKFKLGI 499
                 ++S+SG      Y ++    +++      +F+    ++ ++L+      KF L  
Sbjct: 424  ATTSHNVSISGRGKTVGYFISANYYDKEGIIINSDFK--KYSMRMNLDGKYKRLKFGLNF 481

Query: 500  VGNYLNGFNNLPSLNQTTAGSFLYLLPPNAPNLYNTDGTLN------WDMDPTGTISRFR 553
              +Y    N + +           ++PP  P +YN+DG+ N      W +      +   
Sbjct: 482  SPSYSTS-NRVDASGSNGIVQSALMMPPVWP-VYNSDGSYNYQGNGYWRIGNDYQHNAVL 539

Query: 554  NPLSTYLTNPFEVKTNNFTSNITASYNIVNGLDFKTSFGYNRLDQQEFTSNLAESVAPTA 613
            NP++        V        + A   +  GL +  SFG +           +E      
Sbjct: 540  NPVAMANLQSDVVDRMAIVGKVFAELELFKGLTYNISFGGDYYGSHNDQYRSSELPLLGQ 599

Query: 614  RNTFIRSGSYRFTNTN---NYIIEPQILYNHQFS-GHKLNFLLGATYNKSQGETSGITGS 669
            +   I+S    ++++    N++IE +I YN   +  H +N +L  +  K   +   +T +
Sbjct: 600  KYYDIKSNPTAYSSSGFYFNWLIENKINYNTVINEDHSINAVLVQSAQKETYKGDNVTAT 659

Query: 670  GQSSDSQVKNLSASSSFNQTGSSFYEYRYNAGFFRLDYNFKERYLLGLSARRDGSTRFGP 729
               +D  ++ +S  +   +  S   ++   +   R+ Y++K +Y+   + R DGS+RFG 
Sbjct: 660  DFPND-YIQTISGGTVI-KGASDKTQWSIASYLARVQYSYKGKYMASGAIRADGSSRFGK 717

Query: 730  DNRFANFWSAAVGWIVS-EETLVKEK-LPWLNFFKLRANYGLTGSDGVGDYTFMDLYSAN 787
            +NR+  F SA++ W VS E+   K K L +++  K+R +YG+TG+  +G+Y  + L + +
Sbjct: 718  NNRWGYFPSASLAWRVSGEDFFTKAKFLSFVDDLKIRTSYGVTGNFQIGNYDHLSLMALD 777

Query: 788  TFYLPYQN---VVGFAPGRLLNSKLQWEEKRSLNIGFDANLLNNRVTLGINYNRNRSSNL 844
             + L   N   V G+ P  + N  L WE+   +N+G D  +    + + ++Y    +SN+
Sbjct: 778  NYILGTGNGQLVQGYKPNTIKNDDLSWEKNAMVNVGVDLQMFKGLLGITVDYYNTNTSNM 837

Query: 845  LQSLNLPVTAGFASVDVNFDALVQNTGWEYTIGVKLLAAKAFKWNVNANLTVPTNK---- 900
            L ++ +P   G+++  +N    V N GWE  +  +    K F ++ NAN    TN+    
Sbjct: 838  LLNVPVPHLTGYSTALMNI-GKVNNRGWEIALTSQKNFTKDFGYSFNANYATNTNEVKAL 896

Query: 901  ------LLSLPSLDKVNRVAGFGYHIGLPLGTTTMNTYMGV--------------NPLTG 940
                  ++S  S+D    +      +G P+G   +    G+              N   G
Sbjct: 897  GPGNAPIISTGSVDHAYYIT----KVGEPIGCYYLLVQDGIFSNEEELKKYPHFSNTQPG 952

Query: 941  LEVLEDINGNPVATAGSTANMKTTLRNLYTSPFYAGLQSSFEYKGLSMNLSFD---FNKQ 997
                 D++G+ V       +   T+   Y   F  G      YKG+ ++ +F     N+ 
Sbjct: 953  DFRFVDVDGDGV----MDLDKDRTIVGNYMPDFTYGFGGKVWYKGIDLDFNFQGVYGNEI 1008

Query: 998  LKPRYFFVSSRPGRDAYNQPEIAYSLNRW---ENPGDIAVIQKYSTLLGSGLLTQTEAFY 1054
            L     ++ +  G    N      +LNRW   +NPG+  V +      G    T T    
Sbjct: 1009 LNLNRRYIDNLEG----NTNGTTIALNRWKSADNPGNGQVNRANRKSKGYNGRTST-WHL 1063

Query: 1055 EDATYLRLTNIAISWNLPKSWTGIIGMKSSRIGINAQNLFTLSKYSG--PDPITGPSGVM 1112
            ED +YLRL N+ + + LP++ T    ++  R+ ++ QNL+T + Y G  P+    PS  +
Sbjct: 1064 EDGSYLRLQNVTLGYTLPQNLTRRFFVEKLRVYVSGQNLWTSTNYGGYNPEVNARPSNSL 1123

Query: 1113 PP 1114
             P
Sbjct: 1124 SP 1125