Pairwise Alignments

Query, 1076 a.a., error-prone DNA polymerase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella amazonensis SB2B

 Score =  363 bits (933), Expect = e-104
 Identities = 281/1058 (26%), Positives = 496/1058 (46%), Gaps = 67/1058 (6%)

Query: 3    YSELQVTSNFSFLRGASHAHELVEQAEAFDYQKIAITDRNTLAGIVRAHAACREKNVKLI 62
            +  L+V S+FS   G +    ++ +AEA     IA+TD+N L G+V+ ++ C +K +K I
Sbjct: 6    FVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDKGIKPI 65

Query: 63   PACRLDML------DGPSLLAYPTDKDAYGRLSALLTLGNMRAE-KGSCHISRADVYAHS 115
                  ML      +  ++     D + Y  L+ L++   +R + +G   I +  +  ++
Sbjct: 66   IGADFWMLVPGFEDEFCAVTVLAMDNEGYQNLTQLISQAYLRGQVQGRVAIDQEWLLTYN 125

Query: 116  KGIIFCL-VMPGELNRRF--EYEASFISAVAEYKQALNGQLYLAATRSYMGNDDKLIFRT 172
             GI+       G+L +       A   S    Y++    + ++   R+   +++  +   
Sbjct: 126  SGILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIELIRTGRADEETYLHMA 185

Query: 173  SQLSDFYGIPVVATGDIHYHNPSRRELQDVLTCVREKCTIQEAGFRLHQNAERYMKEVAE 232
             + +   G+PVVAT  + + +P   E  ++   + +  T+ +       + ++Y++   E
Sbjct: 186  VKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRRPKKYSEQQYLRSEDE 245

Query: 233  MERLFRKYPSAIKNTMVIAEACNFSLDELKYVYPEE-----------INQSGKSPMEELE 281
            M  LF   P AI+NT+ IA+ CN ++   +Y  P             + +S +   E LE
Sbjct: 246  MCELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPNFPTGELSTADFLVERSKEGLEERLE 305

Query: 282  FLTWKGAHEFYGEEIPEKVVKMIHHEMEFVRHMDYANYFLFVEDIVREARSRGI-LCQGR 340
            FL    A      E  ++  + +  E++ +  M +  YFL V + ++  +  GI +  GR
Sbjct: 306  FLFPDPAER---AEKRKEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGPGR 362

Query: 341  GSAANSAICFVLGITSVNPMKFDLLFERFISPARNEPPDIDVDFEHERREEIIQYIYNKY 400
            GS A S + + L IT ++P++FDLLFERF++P R   PD DVDF  +RR+E+I ++   Y
Sbjct: 363  GSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAELY 422

Query: 401  GRDRAAIVATVTQQHQKGAIRDVGKAMGLSVDTINRLSSSIWEFTDEWFEGKRVTEQGLN 460
            GR+  + + T      K  +RDVG+ +G S   ++R+S  I              E GL 
Sbjct: 423  GREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPPEPGMTLAKAFEVEPGLQ 482

Query: 461  ---PNDPHLKKTLELTSQMMGFPRQLGQHTGGFVVTQGKLTDLCPILNARMEDRTNIEWN 517
                 D  +K  +++  ++ G  R  G+H GG V+   K+TD  P+           +++
Sbjct: 483  EAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQFD 542

Query: 518  KDDIDALGFLKVDVLALGMLTCIRKAFDLCRDYYGK----HFTLANIPQDDPEVYDMICL 573
            K+D++  G +K D L L  LT I  A  +      K       +A IP DD + + ++  
Sbjct: 543  KNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPVDIAAIPLDDSKSFSVLKR 602

Query: 574  ADTLGVFQIESRAQMSMLPRLKPREFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEPVV 633
             +T  VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q  MV  ++ R++G E + 
Sbjct: 603  YETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGHEEIS 662

Query: 634  YPS-----PELEEILGRTLGVPLFQEQAMKIAIVAAGFTPAEADGLRRSMATFKFKGLVN 688
            YP        L+ IL  T G+ L+QEQ M+IA   AG+T   AD LRR+M   K + +  
Sbjct: 663  YPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPEEMAK 722

Query: 689  QYEQKLIEGMLAKGYTLEFAKRIFKQLEGFGSYGFPESHAASFALLVYVSCWLKHYYPDV 748
            Q       G +  G   E A +IF  +E F  YGF +SH+A++AL+ Y + WLK ++P  
Sbjct: 723  Q-RAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPSE 781

Query: 749  FAAALLNSMPMGFYQPAQIVIDAQKHTVEVREVDVNHSLWDNKLEEKSGKYFAMRLGFRQ 808
            F AA++++      +   +V +  +  +++   DVN  L+   ++E     +    G   
Sbjct: 782  FMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKFTVDEDLNIVY----GIGA 837

Query: 809  ISGIRADDVDTLVNGRGEGYKSITALRDVGVSI-------AALERLADADAFRSMGMDRR 861
            I G+    V+ ++  R +G    T L D    I         +E+L  + A  S+G  R 
Sbjct: 838  IKGVGEGPVEAILEARKDG--PFTDLFDFCARIDLKKLNKRVIEKLIYSGALDSLGPHRA 895

Query: 862  KALWEVSALQDMPVELFKGQAS-------------ESVLETQVELPLMGKGEHVVQDYAT 908
              +  +        +  K QA+             +   +  VE         +  +  T
Sbjct: 896  SMMATLPEAMQAADQHAKAQATGQHDMFGLLNDDQQDEKQQFVECTPWPDKIWLEGERET 955

Query: 909  VGLSLKAHPGSFVRPQLDMLNIRSCHHINNDSTNGQLVKVAGLVLVRQRPGTAGG--VCF 966
            +GL L  HP +    +L          I + +  G+ VK AGLV+  +   T  G  +  
Sbjct: 956  LGLYLTGHPINQYLKELKNYTSGRLKDI-HPTERGKTVKAAGLVVASRVMLTKRGSKMGL 1014

Query: 967  ITIEDETGYSNLVVFEKLFDTYRKEILHARLLMVEGRL 1004
            +T++D++    +++F + F+ +   +   R+L+ EG +
Sbjct: 1015 LTLDDKSARLEVMLFTEAFEKFGHLLEKDRILICEGEV 1052