Pairwise Alignments

Query, 1076 a.a., error-prone DNA polymerase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1078 a.a., DNA polymerase III, alpha subunit (RefSeq) from Shewanella loihica PV-4

 Score =  792 bits (2045), Expect = 0.0
 Identities = 455/1079 (42%), Positives = 635/1079 (58%), Gaps = 70/1079 (6%)

Query: 1    MAYSELQVTSNFSFLRGASHAHELVEQAEAFDYQKIAITDRNTLAGIVRAHAACREKNVK 60
            + Y+EL V SN+SFLRGASH HELVEQA+   YQ +A+TD  + AG+V+AH A +  ++K
Sbjct: 5    LQYAELHVLSNYSFLRGASHPHELVEQAKRLGYQALALTDECSFAGVVKAHEAAKRCDLK 64

Query: 61   LIPACRLDMLDGPSLLAYPTDKDAYGRLSALLTLGNMRAEKGSCHISRADVYAHSKGIIF 120
            LI      + +G  +L  P  + AYG +SAL+T       KG   +S   + A  + ++ 
Sbjct: 65   LILGAEFHLDEGLFVLLAPC-RFAYGEISALITNARRSQGKGEYRVSLEAILAQQQSLLL 123

Query: 121  -----------------------------------------------CLVMPGELNRRFE 133
                                                                 E N    
Sbjct: 124  WRPPSLAQFRQAGEARRDEARSDDARSDLAVNDTAESEMAGGDTAKGSAAQSDEPNLLSR 183

Query: 134  YEASFISAVAEYKQALNGQLYLAATRSYMGNDDKLIFRTSQLSDFYGIPVVATGDIHYHN 193
            Y     S  +    A   +L+L   R  +  +   + +   LS    +P VA G +  H 
Sbjct: 184  YRDHIASIASRLVVAFPDRLHLLMERLLLPGEALNLQQWQWLSQTQKVPCVAAGGVRMHE 243

Query: 194  PSRRELQDVLTCVREKCTIQEAGFRLHQNAERYMKEVAEMERLFRKYPSA-IKNTMVIAE 252
              R+ L D+LTC+     +         NAE  +K +A   +   +YP   I N + +A 
Sbjct: 244  AERQPLLDILTCIAHGRDLDSGVALCSINAEASLKPIAAQRK---RYPQEWIDNGLALAR 300

Query: 253  ACNFSLDELKYVYPEEINQSGKSPMEELEFLTWKGAHEFYGEEIPEKVVKMIHHEMEFVR 312
             C+FSLDELKY YP E+  +G    + L     +GA   + + +P++V      E+E + 
Sbjct: 301  RCHFSLDELKYEYPAEVVPAGMQASDYLAQAVREGARRRFPDGVPDRVKAQYEKELELIA 360

Query: 313  HMDYANYFLFVEDIVREARSRGILCQGRGSAANSAICFVLGITSVNPMKFDLLFERFISP 372
             M Y  +FL + DIV  A+S+ IL QGRGSAANS +C+ LGIT V+P K ++LFERFIS 
Sbjct: 361  AMAYEYFFLTIYDIVCFAKSQQILYQGRGSAANSVVCYCLGITEVDPTKINMLFERFISK 420

Query: 373  ARNEPPDIDVDFEHERREEIIQYIYNKYGRDRAAIVATVTQQHQKGAIRDVGKAMGLSVD 432
             RNEPPDIDVDFEHERREE+IQYIY KYGRDR A+ A V     K A+ DVGKA+G+  +
Sbjct: 421  ERNEPPDIDVDFEHERREEVIQYIYRKYGRDRTALAAAVICYRFKSAMGDVGKALGIDAE 480

Query: 433  TINRLSSSIWEFTDEWFEGKRVTEQ--GLNPNDPHLKKTLELTSQMMGFPRQLGQHTGGF 490
             +  +  +I    D        T Q   + P     +  L L   ++GFPR L QH GGF
Sbjct: 481  QVALMIKNI----DRRDPKHHWTTQLAAMLPEAGRGRMLLPLVQTLIGFPRHLSQHVGGF 536

Query: 491  VVTQGKLTDLCPILNARMEDRTNIEWNKDDIDALGFLKVDVLALGMLTCIRKAFDLCRDY 550
            +++ G L++L PI NA M DRT I+W+KDD+++LG LKVD+LALGMLT IRK F L    
Sbjct: 537  IISAGPLSELVPIENAAMADRTVIQWDKDDLESLGLLKVDILALGMLTAIRKTFTLL-SL 595

Query: 551  YGKHFTLANIPQDDPEVYDMICLADTLGVFQIESRAQMSMLPRLKPREFYDLVIEVAIVR 610
              K F++A++  ++ EVY M+   D++GVFQ+ESRAQ +MLPRLKP  +YDLV+++AIVR
Sbjct: 596  PEKAFSMADVAWEEAEVYRMLQAGDSIGVFQVESRAQSAMLPRLKPACYYDLVVQIAIVR 655

Query: 611  PGPIQGDMVHPYLRRRNGEEPVVYPSPELEEILGRTLGVPLFQEQAMKIAIVAAGFTPAE 670
            PGPIQGDMVHPYLRRR+G E V YPSP +E +L RT+GVP+FQEQ +++A+VAAGF+  E
Sbjct: 656  PGPIQGDMVHPYLRRRDGLEAVEYPSPAVESVLSRTMGVPIFQEQVIQLAMVAAGFSGGE 715

Query: 671  ADGLRRSMATFKFKGLVNQYEQKLIEGMLAKGYTLEFAKRIFKQLEGFGSYGFPESHAAS 730
            AD LRR+MA++K  G + ++E KL++GM A+GY+  FA++I++Q++GFG YGFPESH+AS
Sbjct: 716  ADQLRRAMASWKRTGELEKFEAKLLQGMAARGYSQTFAEQIYRQIKGFGEYGFPESHSAS 775

Query: 731  FALLVYVSCWLKHYYPDVFAAALLNSMPMGFYQPAQIVIDAQKHTVEVREVDVNHSLWDN 790
            FALL YVS +LKH+YP  F  ALLNS PMGFY P+Q++ D Q+H V V  V VNHS WDN
Sbjct: 776  FALLAYVSAYLKHHYPAAFCCALLNSQPMGFYSPSQLIQDVQRHDVMVLPVCVNHSDWDN 835

Query: 791  KLEE-KSGKYFAMRLGFRQISGIRADDVDTLVNGRGE-GYKSITALRDVGVSIAALERLA 848
             L      +  A+RLGFRQ+ G+R +++ TL+  R E G+  +  L ++G+S   L  LA
Sbjct: 836  SLVPLLEAEQPAIRLGFRQVKGLRLEEIKTLIAARPEGGFTRVEQLYELGLSQGCLTLLA 895

Query: 849  DADAFRSMGMDRRKALWEVSALQ-DMPV-ELFKGQASESVLETQVELPLMGKGEHVVQDY 906
             ADA  ++   R +A W++SA Q  +P+ +     ASE VL    E+  M        DY
Sbjct: 896  SADALLTLAGHRYQARWQLSAYQPSLPLFDDLPAVASEVVLAPPSEMAAM------QSDY 949

Query: 907  ATVGLSLKAHPGSFVRPQLDMLNIRSCHHINNDSTNGQLVKVAGLVLVRQRPGTAGGVCF 966
              +GLSL  H  + +R     +  R    +  D  +GQLV VAG+V+ RQRPGTA GV F
Sbjct: 950  RHLGLSLGRHVMAQLRGLAPFVGCRHASEL-ADCRHGQLVHVAGVVVGRQRPGTASGVTF 1008

Query: 967  ITIEDETGYSNLVVFEKLFDTYRKEILHARLLMVEGRLQREGKVVHVIVSKCFDFTKML 1025
            +T+EDETG  N++V+       R+  L +++L V G L+ +  V HVI  +  D + ++
Sbjct: 1009 VTLEDETGNINVIVWSATARAQRQPFLTSKILKVTGVLETQSGVSHVIAGRLEDLSTLV 1067