Pairwise Alignments

Query, 1076 a.a., error-prone DNA polymerase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1110 a.a., DNA-directed DNA polymerase III PolC from Dechlorosoma suillum PS

 Score =  788 bits (2036), Expect = 0.0
 Identities = 426/885 (48%), Positives = 580/885 (65%), Gaps = 25/885 (2%)

Query: 3   YSELQVTSNFSFLRGASHAHELVEQAEAFDYQKIAITDRNTLAGIVRAHAACREKNVKLI 62
           Y+EL   SNFSFLRGASH  ELV++A    Y  +A+TD  + AG VRAH A +   +KLI
Sbjct: 15  YAELHCLSNFSFLRGASHPEELVQRAVELGYGALAVTDECSFAGSVRAHVAAKAAGLKLI 74

Query: 63  PACRLDMLDGPSLLAYPTDKDAYGRLSALLTLGNMRAEKGSCHISRADV--YAHSKGIIF 120
               + + DG  L+    +++ YG LSAL+TL   RAEKG+  ++R D+  +  S  +  
Sbjct: 75  HGTEIVLADGLKLVLLAQNREGYGNLSALITLARRRAEKGAYRLTRGDLEGFGPSGALPD 134

Query: 121 CLVM--PGELNRRFEYEASFISAVAEY-KQALNGQLYLAATRSYMGNDDK-LIFRTSQLS 176
           CL +  PG      ++++    A   +  Q   G+ +LA    + G DD+  + +  QL+
Sbjct: 135 CLALWVPGP-----QFDSPPDPADGRWLAQRFPGRSWLAV-ELHAGPDDRGRLEQLQQLA 188

Query: 177 DFYGIPVVATGDIHYHNPSRRELQDVLTCVREKCTIQEAGFRLHQNAERYMKEVAEMERL 236
              G+P++A GD+H H+ +RR LQDVLT +R   T+  AG  LH N ER+++    + RL
Sbjct: 189 ADCGLPLLAAGDVHMHSRARRPLQDVLTALRLNTTVFAAGHALHPNGERHLRPRLRLARL 248

Query: 237 FRKYPSAIKNTMVIAEACNFSLDELKYVYPEEINQSGKSPMEELEFLTWKGAHEFYGEEI 296
           +   P  +  T+ +A  C FSLDEL+Y YPEE+   G +P   L      G    Y + +
Sbjct: 249 YP--PELLAETLAVAARCTFSLDELRYEYPEEVVPHGLTPAAYLRQEVEAGLAVRYPDGV 306

Query: 297 PEKVVKMIHHEMEFVRHMDYANYFLFVEDIVREARSRGILCQGRGSAANSAICFVLGITS 356
           PEK    + +E+  +  + Y  YFL V DIVR ARSR ILCQGRGSAANSA+C+ LGIT 
Sbjct: 307 PEKARAQVEYELGLIARLQYEAYFLTVYDIVRFARSREILCQGRGSAANSAVCYALGITE 366

Query: 357 VNPMKFDLLFERFISPARNEPPDIDVDFEHERREEIIQYIYNKYGRDRAAIVATVTQQHQ 416
           V+P K +LLFERFIS  R EPPDIDVDFEH+RREE+IQY+Y KYGR+RAA+   +     
Sbjct: 367 VDPAKSELLFERFISAERGEPPDIDVDFEHQRREEVIQYLYAKYGRERAALTGALITYRT 426

Query: 417 KGAIRDVGKAMGLSVDTINRLSSSI--WEFTDEWFEGKRVTEQGLNPNDPHLKKTLELTS 474
           +GA+RD G+A+G   + I+ L+ ++  W+  DE  E  R+   GL+P  P + K L ++ 
Sbjct: 427 RGALRDAGRALGFGREQIDALAGTLAWWDRQDELPE--RLRAVGLDPESPRVAKWLAVSR 484

Query: 475 QMMGFPRQLGQHTGGFVVTQGKLTDLCPILNARMEDRTNIEWNKDDIDALGFLKVDVLAL 534
            + GFPR L QH GGFV+++G L+ L PI NA M +R+ I+W+KDDIDALG +KVDVLAL
Sbjct: 485 ALRGFPRHLSQHVGGFVISRGPLSRLVPIENAAMAERSVIQWDKDDIDALGLMKVDVLAL 544

Query: 535 GMLTCIRKAFDLCRDYYGKHFTLANIPQDDPEVYDMICLADTLGVFQIESRAQMSMLPRL 594
           GML+ IR+A D+     GK   L +IP++   VYDM+C  D+LG+FQ+ESRAQM+MLPRL
Sbjct: 545 GMLSAIRRALDMLGARDGKPVRLQDIPRESKAVYDMLCRGDSLGIFQVESRAQMAMLPRL 604

Query: 595 KPREFYDLVIEVAIVRPGPIQGDMVHPYLRRRNGEEPVVYPSPELEEILGRTLGVPLFQE 654
           KPR+FYDLV++VAIVRPGPIQGDMVHPYL+RR+GEE +   SP ++++L RT GVP+FQE
Sbjct: 605 KPRQFYDLVVQVAIVRPGPIQGDMVHPYLKRRHGEEKIEKISPAVDKVLQRTYGVPIFQE 664

Query: 655 QAMKIAIVAAGFTPAEADGLRRSMATFKFKGLVNQYEQKLIEGMLAKGYTLEFAKRIFKQ 714
           Q M++A+VAAGFTP EAD LRR+MA +K KG +  +EQKLI GM  +G    FA+RIF+Q
Sbjct: 665 QVMQLAVVAAGFTPGEADQLRRAMAAWKRKGGLEPFEQKLIRGMQERGLPESFARRIFEQ 724

Query: 715 LEGFGSYGFPESHAASFALLVYVSCWLKHYYPDVFAAALLNSMPMGFYQPAQIVIDAQKH 774
           ++GFG YGFPESHAASFA+LVY S WLK + P  F   LLN+ PMGFY PAQ+V DAQ+H
Sbjct: 725 IKGFGDYGFPESHAASFAILVYFSAWLKRFEPAAFLCGLLNAHPMGFYAPAQLVQDAQRH 784

Query: 775 TVEVREVDVNHSLWDNKLEE-----KSGKYFAMRLGFRQISGIRADDVDTLVNGRGEG-Y 828
            V V   DV HS W++ L E        +   +RLG R+I+G      + +V  R EG +
Sbjct: 785 GVTVLPPDVTHSAWESLLVELLPGHPPARPRTVRLGLREIAGFNQAAAERIVAARQEGPF 844

Query: 829 KSITAL-RDVGVSIAALERLADADAFRSMGMDRRKALWEVSALQD 872
           +S+  L    G+    LERLA A+A +++   RR A WE +A+++
Sbjct: 845 QSVADLAARAGLQRPELERLAAANALQALAGHRRAAAWESAAVEN 889



 Score =  105 bits (261), Expect = 2e-26
 Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 6/178 (3%)

Query: 857  GMDRRKALWEVSALQDMPVELFKGQASESVLETQVELPLMGKGEHVVQDYATVGLSLKAH 916
            GMD R        +  +P++     A    +E    LP   +GE +V DYAT+GL+L  H
Sbjct: 937  GMDERD-----ERVHSLPIQGDLFAALPPPVEAPPPLPTPTEGEDLVADYATLGLTLGRH 991

Query: 917  PGSFVRPQLDMLNIRSCHHINNDSTNGQLVKVAGLVLVRQRPGTAGGVCFITIEDETGYS 976
            P + +R +L      +   +   + + +L + AG+V  RQRPGTA G+ F+T+EDETG  
Sbjct: 992  PLALLRDRLTAGRFITAAELRA-APDRKLARAAGIVTHRQRPGTASGIVFVTMEDETGPI 1050

Query: 977  NLVVFEKLFDTYRKEILHARLLMVEGRLQREGKVVHVIVSKCFDFTKMLGKLVQREVD 1034
            N+++  +L +  R+E L ARLL V G+L+    V H++  +  D T +LG+L  R  D
Sbjct: 1051 NVILRPELVEKQRRETLAARLLGVYGQLESRHGVTHLVAKRLVDLTPLLGRLATRSRD 1108