Pairwise Alignments

Query, 352 a.a., 23S rRNA (adenine(2503)-C(2))-methyltransferase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 373 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  249 bits (637), Expect = 6e-71
 Identities = 136/349 (38%), Positives = 205/349 (58%), Gaps = 7/349 (2%)

Query: 2   VTAKKTDIRALDLPQLQQHLVAMQQPAFRAKQIYQWLWEKSATSFEQMSNLSKDLRKALD 61
           ++ KK ++  LD   L+     M +  FRA Q+ +WL+    + FEQM+N++K LR  L 
Sbjct: 1   MSEKKINLLDLDRKGLRALFTEMGEKPFRADQLMKWLYHFGVSDFEQMTNINKVLRAKLA 60

Query: 62  ETFAINAVQVNNSQFSNDHTIKNTFRLADGNIVEGVLIPLEDRMTACVSSQVGCSLTCKF 121
               + A ++++ Q S D TIK    + +G  VE V IP EDR T CVSSQVGC+L C F
Sbjct: 61  ARCEVVAPEISSYQKSADGTIKFAINVGNGQEVETVYIPEEDRATLCVSSQVGCALECTF 120

Query: 122 CATGYMDRKRNLNADEIYDQVVLIDK---QAKQNYNNPLTNIVYMGMGEPLLNYANVLKS 178
           C+T      RNL   EI  Q+  +       K+    P++N+V MGMGEPLLN  NV+ +
Sbjct: 121 CSTAQQGFNRNLTVSEIVGQIWRVSHFLGFQKETGERPISNVVMMGMGEPLLNLKNVMPA 180

Query: 179 IERITAPDGLNMSYKRITVSTAGIAKMIKKLGDDGAKFNLALSLHAADDKKRNEIMPINE 238
           I+ +    G ++S +R+TVST+G+   +  LGD+     LA+S+HA +D+ R+ ++P+N+
Sbjct: 181 IDIMLDDFGFSLSKRRVTVSTSGVVPALDILGDN-LDVALAVSIHAPNDELRDVLVPVNK 239

Query: 239 ANSLKALADALKYYFAKT---KNPVTYEYIVFNHFNDEISDAMDLAKFCKHIPCKVNLIE 295
              L+    A++ Y AK+   +  VT EY++ +H ND    A +LA+  K  PCK+NLI 
Sbjct: 240 KYPLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHELAELMKDTPCKINLIP 299

Query: 296 YNPISFADFTNAEGDKIDAFSNYLKSQGINTNIRRSRGKDIDAACGQLA 344
           +NP   + +  +   +ID FS  L   G+   +R++RG DIDAACGQLA
Sbjct: 300 FNPYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLA 348