Pairwise Alignments

Query, 467 a.a., lytic transglycosylase from Pedobacter sp. GW460-11-11-14-LB5

Subject, 618 a.a., Lytic transglycosylase catalytic (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  144 bits (363), Expect = 8e-39
 Identities = 124/424 (29%), Positives = 187/424 (44%), Gaps = 81/424 (19%)

Query: 91  KRKDMFGKMIGLSSYYFPIFDKALKDYNIPQEIKYLTIVESQMNPHAISRVGATGIWQFM 150
           + +  F + +  S  Y P   +  +   IP+EI YL IVES  NP+A+S  GA G+WQFM
Sbjct: 114 RARGTFERYLKRSQNYLPHIREVFRQQGIPEEIAYLAIVESGFNPNAVSPAGAVGVWQFM 173

Query: 151 FGTGKAYGLKMDNFVDERKDPIQASYAAAAYFRDAFEELGDWLLAIAAYNCGKGNVNRAI 210
             TG  YGL    ++DER+DP +++ AAA Y +  + + GDW LA+AAYN G+G ++RA+
Sbjct: 174 PYTGMRYGLSYSWWMDERRDPYKSARAAADYLQKLYGDFGDWHLAMAAYNAGEGKISRAL 233

Query: 211 DKAGSRDFWVIR---------QFLPKETRNYVPAFIAAVYVMNYSGKHQITAQASSMFLK 261
           +  G+  F+ +R           L  ETR YVP FIA   +M         A   S   K
Sbjct: 234 EGTGAEGFFDLRAKNHMLDGKAQLKDETRQYVPRFIAVAKIMRNLESLGFQAPDYSCPPK 293

Query: 262 TDTVQTTRFVSLSTLAKVLNVDEAAIMALNPSYKKKIVNGTDDEPKRIVMPKLRDIDYAG 321
            + ++      L  LA+ +  + +   A NP++ ++ ++  D      V P         
Sbjct: 294 LEQLRVKPGTDLMALAQAMGQNWSDFSANNPAF-RRYISPPDAHTTVYVHP--------- 343

Query: 322 IYDVLNNQEVEVNMKVVAASTDDVRDLRKKKTKSIATTAVVYHKVTSGQSLTTVADKYGV 381
                        M + AA+      L K + +S A   V  +KV  G +L  +  + GV
Sbjct: 344 -------------MHLEAATA----FLAKPQQRSYAGWRV--YKVRQGDTLDRIGKRCGV 384

Query: 382 EVQDLRVWNGLKSKTLVPGQRLKI---------YAKNRTPLKAPSSF------------- 419
            V  L+  N    K  V GQ L I          A+  TP    ++              
Sbjct: 385 PVSVLKRVNKASGKLQV-GQELMIPGGGDATDFTAQAETPASKSAASAKGGKAVADKQDK 443

Query: 420 -------------------LSYKVKTGDTLSEIAEKFDGATVQSIRRDNRLSKAGLQVGM 460
                               +Y VK GDTL  IA K  G++V+++++ N LS   LQ+G 
Sbjct: 444 SDKSDRSSSVRTRDIAERRATYIVKQGDTLYGIA-KAQGSSVETLQKANGLSGIALQLGQ 502

Query: 461 ILKI 464
            L I
Sbjct: 503 KLYI 506



 Score = 32.3 bits (72), Expect = 5e-05
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 360 AVVYHKVTSGQSLTTVADKYGVEVQDLRVWNGL-KSKTLVPGQRLKIYA 407
           A+VY KV  G ++  +A K+ V  ++L  WN L +   L PG ++ ++A
Sbjct: 569 AIVY-KVQEGDTMWAIARKFNVPPKELLRWNNLERDAQLKPGDQITVHA 616



 Score = 32.0 bits (71), Expect = 6e-05
 Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 14/115 (12%)

Query: 365 KVTSGQSLTTVADKYGVEVQDLRVWNGLKSKTLVPGQRLKIYAKNRTPLKAPSSFLS--- 421
           +V  G  L  +A   G    D    N    + + P         +   L+A ++FL+   
Sbjct: 298 RVKPGTDLMALAQAMGQNWSDFSANNPAFRRYISPPDAHTTVYVHPMHLEAATAFLAKPQ 357

Query: 422 ---------YKVKTGDTLSEIAEKFDGATVQSIRRDNRLSKAGLQVGMILKISRG 467
                    YKV+ GDTL  I ++  G  V  ++R N+ S   LQVG  L I  G
Sbjct: 358 QRSYAGWRVYKVRQGDTLDRIGKRC-GVPVSVLKRVNKAS-GKLQVGQELMIPGG 410



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 415 APSS-FLSYKVKTGDTLSEIAEKFDGATVQSIRRDNRLSKAGLQVG 459
           APS   + YKV+ GDT+  IA KF+    + +R +N    A L+ G
Sbjct: 564 APSGRAIVYKVQEGDTMWAIARKFNVPPKELLRWNNLERDAQLKPG 609