Pairwise Alignments

Query, 199 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 200 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  105 bits (261), Expect = 7e-28
 Identities = 60/182 (32%), Positives = 102/182 (56%)

Query: 2   APGRIEDERKLIEKIVGGDEQAFSVLFFKYLPVLQIFATKFTKSDDAAEEIIQDSFLRVW 61
           A   + DER+L+ +++ GDE AF  L+  Y   L  FA KF KS + AE+I QD+F  VW
Sbjct: 3   ATDTLMDERELVLRLIDGDEDAFCELYAAYKNRLLYFAMKFVKSREFAEDIFQDAFTVVW 62

Query: 62  LNRDKLAEVDNVKAYLYKYVSNECLSYLRKKLKEDRVVDAFTAKQQNSHNSTVETINLNE 121
            +R  +    +  +YLY  V N  L+ +R    ED++ +   +   +S N T   I  ++
Sbjct: 63  QSRRFINPDASFSSYLYTIVRNRILNQIRDMANEDKLKEHILSHAVDSANETNNKILFDD 122

Query: 122 VTKIIAIAVEKLPDQRKNIYQLSRRDGKTIPEIAEILNISPNTVKNALVTALKSIRIQLD 181
           +  +++ A+E+L  +++ ++ +SR    +  EIAE L +S NTV+  +  +LK IR  L 
Sbjct: 123 LKDVLSRALEQLTPRQREVFNMSRDLQMSHKEIAEALGVSVNTVQEHISVSLKVIRAYLT 182

Query: 182 QH 183
           ++
Sbjct: 183 KY 184