Pairwise Alignments

Query, 243 a.a., tRNA pseudouridine(55) synthase TruB from Pedobacter sp. GW460-11-11-14-LB5

Subject, 384 a.a., pseudouridine synthase from Bifidobacterium breve UCC2003

 Score =  139 bits (350), Expect = 8e-38
 Identities = 92/247 (37%), Positives = 124/247 (50%), Gaps = 47/247 (19%)

Query: 18  LLLINKPYKWTSFDVVGKIRNSLKPLKLKVGHAGTLDPLATGLLIICTGKLTKQIDTFQA 77
           LL+I+KP   TSFD V  +R +L  +K KVGHAGTLDP+ATG L+I  G  T+ ++   A
Sbjct: 9   LLVIDKPQGVTSFDAVAAVRGALH-IK-KVGHAGTLDPMATGALVIAFGHATRLLNAIVA 66

Query: 78  EEKEYTGTMILGATTPSFDMETEV-------------------------DQTFDISNISE 112
            +K Y  T+ LG  T + D E EV                           +   S+  +
Sbjct: 67  HDKTYEATIRLGLRTTTDDAEGEVLVDDEVRSRWLELSSQLTEGGHSEGPSSLPASSWQQ 126

Query: 113 DEIYAACKPFIGDIEQYPPAHSAVKVNGERLYVKARLGEEVELRKRFVSVLEFEITRIE- 171
                    F GDIEQ P   SA+K+NG+R Y  AR G++VEL+ R V++ EF +  I  
Sbjct: 127 LLTRTIAANFTGDIEQIPNTFSAIKINGQRAYDLAREGKDVELKPRPVTISEFTVLAIRS 186

Query: 172 -------------------LPEIDFRIVCSKGTYIRSLISDFGKTLNRGAYLSKLTRTRS 212
                              + ++D R+ CS GTYIR+L  D G  L  G YL++L RTR 
Sbjct: 187 GFVTGKQSDEALQERGMVSVLDVDVRVSCSSGTYIRALARDLGDKLGVGGYLTRLRRTRV 246

Query: 213 GNFLLKD 219
           GNF L D
Sbjct: 247 GNFALPD 253