Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1099 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  310 bits (794), Expect = 4e-88
 Identities = 299/1128 (26%), Positives = 463/1128 (41%), Gaps = 173/1128 (15%)

Query: 16   MATISAFAQKTVSGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEGKYTLSVPSNSTIVFKY 75
            M  +    Q  + G V D  G PL GV+V +K +T GT T   G +TL       +   Y
Sbjct: 102  MQLVQQEGQIQIKGVVKDAGGDPLIGVNVKVKDSTVGTITDINGNFTLQTRKGDILEISY 161

Query: 76   LGYLNKEVSVGDNNTINVTLLDDAKALGEVVVTGLGEERNTRNLGYAMNNIKGDQIRAAN 135
            +GY  K V V +   +N+ L +D + L EVVVT LG ++  ++L Y +  +   +I    
Sbjct: 162  VGYATKTVKVQNAQVLNIVLTEDTEVLNEVVVTALGIKKEAKSLSYNVQQVSNAEITRIA 221

Query: 136  TINPIAALQGLVPGMMVQPGTGGPQSSPKFQIRGASSLYGSENTPLIVVDGVILSDDAMS 195
              N +  L G V G+ +   + G   S +  +RG  SL G+ N  L VVDG+ +SD + +
Sbjct: 222  DANFVNNLNGKVAGVTINSSSAGVGGSSRVVMRGTKSLNGNNNA-LYVVDGIPMSDMSAA 280

Query: 196  PARAGDQ-----DFGNVLKSINSDDIESISVLKGGSVTALYGSRAINGVLLITTKKGFAQ 250
              +  D        G+ +  +N +DIESISVL G S  ALYGS A NGV++ITTKKG  +
Sbjct: 281  STQPTDSYEGAGQSGDPISGLNPEDIESISVLSGPSAAALYGSAAANGVVMITTKKG-RE 339

Query: 251  KGLGISFSHDETFDNAYALPDMQQEYGSGFTPRDFIKGANGMNQINSASYGFSFGPKLDG 310
                +S S++ TF     LP+ Q  YG                Q    SY +S+G KL+ 
Sbjct: 340  GRTSVSISNNTTFSAPLVLPEFQNTYG----------------QTEVGSY-YSWGSKLNT 382

Query: 311  STILDIDGRQISNSILNNPLSLYETGRYVNSNISMQGGNEKTTFRFSYANNFTKGISPYN 370
             +  D             P   ++TG  V +  S+  G +K     S      KGI   N
Sbjct: 383  LSSYD-------------PKDFFQTGVNVTNAASLSTGTDKNQTYLSLGTTNAKGIIHNN 429

Query: 371  KLNRHTFNFRGTQR-LGDAVVIDATASYSNVRGFNPQRISGDNSLIYGLTWGYPTNFDLD 429
               R+    R   + L D + +D +   S+V+    Q ++        L   Y      D
Sbjct: 430  DYERYNVTVRNVAKMLKDKLTLDLSFMLSSVK---EQNMTSQGLYYNPLVPLYLFPAGDD 486

Query: 430  YWKDNYIDPVNGGRSTVD---PFTTN---QLFFRLNKFSQIQN-ENNFRGTINAKTNFTK 482
            + K       +  R+ +    P++T+   Q  + + +  +I N +N +  T +AK  F  
Sbjct: 487  FSKVQAYQRYDSERNLLTQYWPYSTSLALQNPYWITEHIKIPNHKNRYMATASAKYEFAD 546

Query: 483  WLQLETSASLNWYNTNKEDRELGQDPG------FKGGYYG-SGIRN-VIDSRYRAGLNLN 534
            W+ +   A +   + N E RE   D G       K GYY  S I N  I       +N  
Sbjct: 547  WINVTARAKM---DRNNERRERMYDAGTNTLFASKYGYYSKSNIENQQIYGELLLNINKY 603

Query: 535  HKVNDFDLFLQLGSEVVRSQSKGANYGTSGGLKVPAQYRLSNSINTPTVGEGTPNISQVF 594
               N  ++   +G     +  +   +G  G LK      ++N      V     N++  +
Sbjct: 604  FVDNTLNVTANVGGNFENNDYQSDYFG--GKLK-----SVANLFTFGNVDTSEKNLANQY 656

Query: 595  -------ASYAQGSIGYKNWLTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFTDA 647
                   A +    IGYK+   L++ AR +W+ST     GT   ++FYP   L+ I TD 
Sbjct: 657  GYHLKKRAIFGSAQIGYKSMAYLDVTARNDWSSTF---KGTNTGSFFYPSIGLSGIITDI 713

Query: 648  LKMPS-VFSYGKLRASYVVTGGGTVVYRSNTGYYLKGSNYQAVNSNTANIEQYGFDSQTL 706
             +  + +  Y K+R SY   G    V+ +   Y L              ++         
Sbjct: 714  FRCSTDIMPYMKVRISYSEVGNSPDVFLAIPTYAL--------------VDGVPVTQSRR 759

Query: 707  GNPDLKPLRAFSKEIGIELKMFKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINSG 766
             NP+LKP R  S E G     FKNRL LD + Y+  T NQ    ++ S +G ++ ++N G
Sbjct: 760  PNPNLKPERTKSWEAGFNFVFFKNRLRLDGSIYQSRTYNQFFERTLSSTTGYKSEVVNGG 819

Query: 767  DVQDQGIEFILSGTPIKTQSFSWDAFFNYTRNRNKIISL-----------APGVTTVQLE 815
             V ++GIE  L     K  +F W ++  Y+ NRNK++ L              +  + + 
Sbjct: 820  RVDNKGIELSLRFED-KWGNFGWSSYLTYSLNRNKVVELLRNYEDPYTHELTSLDRIDMG 878

Query: 816  GGDGIRTIAKVGGEYSTLVAAYGYAKYQARDANGNPIDNPNNGKRVISPAGTGGAFYTRA 875
            G    + I   GG    +     Y      D +G    +P++   V  P           
Sbjct: 879  GTSMYKMILTEGGSIGDI-----YVNTLRTDEHGAIYVHPSDQVVVTQP----------- 922

Query: 876  SNYANGLESESTIGSTLPKFYGSIRNVFTYKSLSLSALIDAKFGGYVFSDTYFYGSQTGN 935
                   +     G++ PK+     N F+YK LSL  L  A+ GG V S T       G+
Sbjct: 923  -------DEFVKAGNSAPKYNLGWGNTFSYKGLSLGFLFTARVGGVVVSQTQATMDAYGS 975

Query: 936  LKNTLFGRTVENGGTAYTEAGNQEIGVVLDGVFADGTIINGVNVGGMSHQQAIDKGLRIP 995
             K T   R  +NG                      G I+NG  +G               
Sbjct: 976  SKATAIAR--DNG----------------------GAIVNGRPIGAED------------ 999

Query: 996  TITWRYYNNSNGWG--NGIRERGAFKSSWVAVRDITLSYDLP-KAFVSKIKMNGVKVYAS 1052
                 YY    G G   GI     + ++ V + +++L YD+P   +V  IK  G+ V   
Sbjct: 1000 -----YYTKIGGAGAQGGIGSMYTYSATNVRLAELSLGYDIPINKYVDWIK--GLNVSFI 1052

Query: 1053 ARNIGFLYNNAPDNLNVNDFTSTGAGGAFLGGGTPYVRTFGLGINGSF 1100
             +N+ FLY  AP +  +   T T   G  +   +P +R  G  +  +F
Sbjct: 1053 GKNLFFLYRKAPFDPELTASTGTYFQGIDM-FMSPSLRNLGFSVKVNF 1099