Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1047 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  264 bits (675), Expect = 2e-74
 Identities = 280/1150 (24%), Positives = 479/1150 (41%), Gaps = 159/1150 (13%)

Query: 1    MKKIYLTSLSILLLCMATISAFAQK-TVSGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEG 59
            +K I    L  LL  + +IS  AQ  TV G + D    PL G +V +KGT  G+ T  +G
Sbjct: 7    IKSISARGLFTLLALIMSISLHAQNATVKGVIVDETDTPLIGATVQVKGTATGSITDFDG 66

Query: 60   KYTLSVPSNSTIVFKYLGYLNKEVSVGDNNTINVTLLDDAKALGEVVVTGLGEERNTRNL 119
             YT+     + I F Y+GY  +E+     + +NV ++ D + L EVVV G G  + + +L
Sbjct: 67   NYTIKANKGAVITFSYIGYKTQEIKFTGQSPLNVKMIPDNQTLDEVVVVGYGTMKRS-DL 125

Query: 120  GYAMNNIKGDQIRAANTINPIAALQGLVPGMMVQPGTGGPQSSPKFQIRGASSLYGSENT 179
              ++ +I    +    T +   AL G + G+ +    G P +     IRG  +L G +++
Sbjct: 126  TGSVASIAAKDVEGFKTSSVAGALGGQIAGVQITSTDGTPGAGFSINIRGVGTLTG-DSS 184

Query: 180  PLIVVDGVILSDDAMSPARAGDQDFGNVLKSINSDDIESISVLKGGSVTALYGSRAINGV 239
            PL +VDG  + D                +  +++ DIESI VLK  S +A+YG+RA NGV
Sbjct: 185  PLYIVDGFEVDD----------------IDYLSNSDIESIEVLKDASSSAIYGARAANGV 228

Query: 240  LLITTKKGFAQKGLGISFSHDETFDNAYALPDMQQEYGSGFTPRDFIKGANGMNQINSAS 299
            +LITTK G   +   I+++   ++       D+        +P +F+K    +N   S S
Sbjct: 229  VLITTKSGKTGRPT-ITYNGSASYRKISKKLDV-------LSPYEFVKLQGEVNSKYSDS 280

Query: 300  YGFSFGPKLDGSTI----------LDIDGRQISNSILNNPLSLYETGRYVNSNISMQGGN 349
            Y   F P  D + I          + + G    +   N   S        + ++S+ GG 
Sbjct: 281  Y---FKPGNDDNDIPYRYQSLDDYMGVKGVNWQDETFNPTWS-------QDHSLSIMGGT 330

Query: 350  EKTTFRFSYANNFTKGISPYNKLNRHTFNFRGTQRLGDAVVIDATASY--SNVRGFNPQR 407
            + + +  S++     GI   +  ++ T  FR  Q+L  ++  + T +Y  +N +G     
Sbjct: 331  DDSKYNASFSRYIENGIFKNSGFDKTTGKFRLDQKLSKSLSFNITVNYALTNRKGVGTSA 390

Query: 408  ISGDNSLIYGLTWGYPTNFDLDYWKDNYIDPVNGGRSTVDP--FTTNQLFFRLNKFSQIQ 465
             SG  +++  +    PT   L    D  +D      S +DP    + +   ++N   Q +
Sbjct: 391  DSGRFNMLAQILSARPTG-GLKLTDDELLD------SAIDPEMLESGESLAQVNPVKQTE 443

Query: 466  NENN------FRGTINAKTNFTKWLQLETSASLNWYNTNKEDRELGQDPGFKGGY----- 514
            +  N      + G  +      K L  +T+ +   YNT      +    G K  Y     
Sbjct: 444  SVTNTKRAEMWSGNGSISWQIIKGLTFKTAGT---YNTTNNRTNIFYKDGSKEAYRNGQK 500

Query: 515  -YGSGI--RNVIDSRYRAGLNLNHKVNDFDLFLQLGSEVVRSQSKGANYGTSGGLKVPAQ 571
             YG     R+V  + +   L    KV   +  + LG EV     +   Y     +  P  
Sbjct: 501  PYGRTQMGRDVRWTNFN-NLTWKQKVKKHNYDVMLGHEV---SFRSTEYLLGEAMDFPFD 556

Query: 572  YRLSNSI----NTPTVGEGTPNISQVFASYAQGSIGYKNWLTLNLYARKEWNSTLVYSNG 627
              L N       TP+  E + +   + + +A+G+  Y N   L    R + ++     N 
Sbjct: 557  -NLGNDYLGLGATPSKVESSYSEKMLLSFFARGNYNYDNRYLLTATVRADGSTVFSNKNK 615

Query: 628  TGNYNYFYPGADLAWIFTDALKMPSV--FSYGKLRASYVVTGGGTVVYRSNTGYYLKGSN 685
             G    F+P    AW  ++   M  V   S  K+R  + + G   +   SN   YL    
Sbjct: 616  WG----FFPSFSAAWRVSEEAFMKDVDWVSNFKVRLGWGIVGNDRI---SN---YLSMDL 665

Query: 686  YQAVNSNTANIEQYGFDSQTLGNPDLKPLRAFSKEIGIELKMFKNRLGLDFTAYRKNTKN 745
            Y+A      N        + L N +LK   + +  +G++L    NRL +    + KNTK+
Sbjct: 666  YEASKYGVGNNTVTVLTPKQLKNANLKWEGSSTINLGVDLGFLDNRLNVTADFFVKNTKD 725

Query: 746  QIINLSVPSESGVQNRLINSGDVQDQGIEFILSGTPIKTQSFSWDAFFNYTRNRNKIISL 805
             ++  S+   +G  +++ N G +Q++GIE  L+ T I+T+ FSW   FN +  +N +  L
Sbjct: 726  LLLAQSLAHVTGFDSQMQNIGKIQNKGIELSLNSTNIQTRDFSWQTNFNISFIKNTLKGL 785

Query: 806  APGVTTVQLEGG-----DGIRTIAKVGGEYSTLVAAYGY---AKYQARDANGNPIDNPNN 857
            A GV ++    G          IA VG    +L   YGY     YQ+ D    P DN   
Sbjct: 786  ASGVESMYARSGFDSNFTAYDYIATVG---QSLGLIYGYEFDGVYQSSDFYTTP-DNQLI 841

Query: 858  GKRVISPAGTGGAFYTRASNY----ANGL---ESESTIGSTLPKFYGSIRNVFTYKSLSL 910
             K  ++     G        Y     +G+      + IG+ +PK++G I N F YK +  
Sbjct: 842  LKEGVTNNARYGTVKPGVVKYKDQDGDGIITTNDRTVIGNAMPKWFGGITNTFDYKGIDF 901

Query: 911  SALIDAKFGGYVFSDTYFYGSQTGNLKNTLFGRTVENGGTAYTEAGNQEIGVVLDGVFAD 970
            S ++   +G  +++ T  Y +Q+ N +  +     +      T        +V      D
Sbjct: 902  SFMLQFNYGNDIYNATRLYSTQSRNGRRNMLAEVADRWSPTNTS------NLVPS---QD 952

Query: 971  GTIINGVNVGGMSHQQAIDKGLRIPTITWRYYNNSNGWGNGIRERGAFKSSWVAVRDITL 1030
            G I+N V      + + I+ G                             S++ ++++TL
Sbjct: 953  GYIVNDV------YSRFIEDG-----------------------------SFLRLKNVTL 977

Query: 1031 SYDLPKAFVSKIKMNGVKVYASARNIGFLYNNAPDNLNVNDFTSTGAGGAFLGGGTPYVR 1090
             Y LP  +  K  ++ +++YA+ +N+  +   +  +  VN  ++T        G  P  R
Sbjct: 978  GYTLPHKWTRKFHVSRLRLYATGQNLFCVSGYSGYDPEVNSASNTPMTPGLDWGAYPKSR 1037

Query: 1091 TFGLGINGSF 1100
             F  GI+  F
Sbjct: 1038 VFTFGIDLQF 1047