Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1035 a.a., outer membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  350 bits (897), Expect = e-100
 Identities = 308/1121 (27%), Positives = 486/1121 (43%), Gaps = 168/1121 (14%)

Query: 23   AQKTVSGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEGKYTLSVPSNSTIVFKYLGYLNKE 82
            A  TV G V D  G PL G ++  KG   GT T  EG + L VP ++ +   ++GY ++E
Sbjct: 40   ASFTVRGRVIDTYGEPLIGATIREKGGANGTVTDVEGNFFLFVPDSAVLQISFVGYESQE 99

Query: 83   VSVGDNNTINVTLLDDAKALGEVVVTGLGEERNTRNLGYAMNNIKGDQIRAANTINPIAA 142
            VSV   + + V L ++   L  V+VT LG E+   +L YA+  ++G+++     +N I A
Sbjct: 100  VSVKGRSMLEVCLKENILLLDHVIVTALGLEKKESSLAYAVQKVRGEELNRVKEVNMITA 159

Query: 143  LQGLVPGMMVQPGTGGPQSSPKFQIRGASSLYGSENTPLIVVDGVIL----SDDAMSP-- 196
            L G   G+ V   + G   S K  IRG  S+ G +N PL V+DGV +    S+ A S   
Sbjct: 160  LAGKAAGVQVSKNSSGMGGSAKVSIRGVRSVAG-DNQPLYVIDGVPMLNSTSEQAYSAIG 218

Query: 197  --ARAGDQDFGNVLKSINSDDIESISVLKGGSVTALYGSRAINGVLLITTKKGFAQKGLG 254
              A AG++D G+ + ++N +D+ESIS+LKG    ALYGS+A NGV+LITTKKG       
Sbjct: 219  GTANAGNRDGGDGISNLNPEDVESISILKGAPAAALYGSQAANGVILITTKKGNTVGRRD 278

Query: 255  ISFSHDETFDNAYALPDMQQEYGSGFTPRDFIKGANGMNQINSASYGFSFGPKLDGSTIL 314
            I FS   TF+ A++LP+MQ  YG                                 S + 
Sbjct: 279  IHFSTGLTFEKAFSLPEMQNSYGV--------------------------------SDVT 306

Query: 315  DIDGRQISNSILNNPLSLYETGRYVNSNISMQGGNEKTTFRFSYANNFTKGISPYNKLNR 374
            D  G + + ++ +N    + TG    +++S+  GN+K    FSYAN   +GI   NKL++
Sbjct: 307  DSWGEKENLTVYDNLGDFFRTGLTSITSVSVNSGNDKLQTYFSYANTTGRGILNENKLSK 366

Query: 375  HTFNFRGTQRL--------GDAVVIDATASYSNVRG---FNPQRISGDNSLIYGLTWGYP 423
            H  N R T  L        G+  V+  T     V G    NP         + GL + +P
Sbjct: 367  HNINLRETAVLFNSRLKLDGNVNVMKQTVKNKPVSGGFYMNP---------LVGL-YRFP 416

Query: 424  TNFDLDYWKDNYIDPVNGGRSTVDPFTTNQLFFRLNKF---SQIQNEN---NFRGTINAK 477
                L Y+K+NY       +     + T    F  N +   ++IQ+++       +++A 
Sbjct: 417  RGEGLSYYKENYERYDEDRKLNTQNWHTFTEDFEQNPYWIQNRIQSKDARIRLLLSLSAN 476

Query: 478  TNFTKWLQLETSASLNWYNTNKEDRELGQDPGFKGGYYGSGIRNVIDSRYRAG---LNLN 534
               T WL L+   +L+        +          G  G  I          G     + 
Sbjct: 477  LKVTDWLTLQARGNLDHSADKLRQKFYASTATALCGMNGRYIEMDYQETQMYGDVMAMVK 536

Query: 535  HKVNDFDLFLQLGSEV-------VRSQSKGANYGTSGGLKVPAQYRLSNSI--NTPTVGE 585
             ++NDF L + +G  +        R  SK A+      LK    + L+N +  ++ ++ +
Sbjct: 537  KQLNDFTLDVAIGGSINDRITNSTRIDSKNAS------LKYANVFNLANIVMSSSASIDQ 590

Query: 586  GTPNISQVFASYAQGSIGYKNWLTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFT 645
                  Q+ + +A   IGYK  + L+L AR +W+STL Y+       +FYP   ++++  
Sbjct: 591  KIDAHYQLQSVFATAQIGYKEGVFLDLTARNDWSSTLAYTKYEKK-GFFYPSVGVSFLPD 649

Query: 646  DALKMPSVFSYGKLRASYVVTGGGTVVYRSNTGYYLKGSNYQAVNSNTANIEQYGFDSQT 705
              +KMP   S+ KLR +Y + G G   + +    Y+           TA  E    D+  
Sbjct: 650  KWVKMPEWVSFSKLRGAYSIVGNGVPPFITYPVSYV-----------TAGGEILASDAAP 698

Query: 706  LGNPDLKPLRAFSKEIGIELKMFKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINS 765
                ++KP    S E+G+E K  ++RLGL+ T YR +T  Q   L   +      R +N+
Sbjct: 699  FA--EMKPEMTHSVELGMEWKFLQHRLGLNLTYYRTDTYEQFFKLPALAGDKYAYRYVNA 756

Query: 766  GDVQDQGIEFILSGTPIKTQSFSWDAFFNYTRNRNKIISLAPGVTTVQLEGGDGIRTIAK 825
            GD+++QG E  L  TP+ T  F+W    N++ N+NKI+ L         E  + +     
Sbjct: 757  GDIRNQGWEITLDATPVLTPDFTWKTSLNFSANKNKIVEL-------HEELKEFVYGPTS 809

Query: 826  VGGEYSTLVAAYG-----YAKYQARDANGNPIDNPNNGKRVISPAGTGGAFYTRASNYAN 880
                Y+  +   G     Y K   RD  G+ +             GT G +  +      
Sbjct: 810  FSSSYAMKLVKGGSIGDIYGKAFIRDEAGSIV------------YGTDGDY--KGLPLVE 855

Query: 881  GLESESTIGSTLPKFYGSIRNVFTYKSLSLSALIDAKFGGYVFSDTYFYGSQTGNLKNTL 940
            G  +   +G+  P F     + F+YK  SL  L+D ++GG V S T       G  K T 
Sbjct: 856  GDGNTVKVGNANPDFMLGWNHSFSYKGFSLYFLLDWRYGGEVLSQTQAEMDLYGVSKATA 915

Query: 941  FGRTVENGGTAYTEAGNQEIGVVLDGVFADGTIINGVNVGGMSHQQAIDKGLRIPTITWR 1000
              R        Y     Q+I  V                          KG         
Sbjct: 916  QAR-----DKGYVSLEGQQISDV--------------------------KG--------- 935

Query: 1001 YYNNSNGWGNGIRERGAFKSSWVAVRDITLSYDLPKAFVSKIK-MNGVKVYASARNIGFL 1059
            +Y N  G   G+ E   + ++ + +R+I+LSY  P+ +V K   +  +++   ARN+ FL
Sbjct: 936  FYKNVVGGRAGVTEYYMYDATNLRLREISLSYSFPRKWVQKTNCLKDLQLSFVARNLCFL 995

Query: 1060 YNNAPDNLNVNDFTSTGAGGAFLGGGTPYVRTFGLGINGSF 1100
            Y  AP + ++   T     G  +  G P  R+ G  +   F
Sbjct: 996  YKKAPFDPDLVLSTGNDNQGIEV-FGMPTTRSLGFTLTCEF 1035