Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 1106 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  276 bits (707), Expect = 5e-78
 Identities = 298/1115 (26%), Positives = 455/1115 (40%), Gaps = 166/1115 (14%)

Query: 20   SAFAQKTVSGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEGKYTLSVPSNSTIVFKYLGYL 79
            +A + K + G VTD  G PL GV++ + G++ GT T  +G +++  P N+ +   Y+GY 
Sbjct: 116  AAQSVKDIKGKVTDENGEPLIGVNISVDGSSTGTITDFDGNFSIKSPGNARLKISYIGYA 175

Query: 80   NKEVSVGDNNTINVTLLDDAKALGEVVVTGLGEERNTRNLGYAMNNIKGDQIRAANTINP 139
             + ++V + +   +T+  D + L EVVVT LG +R  + L Y +  IK + I      N 
Sbjct: 176  TQLIAVSNKDFYPITMKQDTEVLDEVVVTALGIKRAEKALSYNVQQIKSEDITGIKDANF 235

Query: 140  IAALQGLVPGMMVQPGTGGPQSSPKFQIRGASSLYGSENTPLIVVDGVILSDDAMSPARA 199
            I +L G + G+ +     G   + +  +RGA S+ G +N  L VVDG+ L +  M    +
Sbjct: 236  INSLNGKIAGVSINKSGSGVGGATRVVMRGAKSIEG-DNNALYVVDGIPLFNTNMGNTDS 294

Query: 200  GDQDFGNV----LKSINSDDIESISVLKGGSVTALYGSRAINGVLLITTKKGFAQKGLGI 255
            G    G      +   N +DIESIS+L G S  ALYGS A NGV+LITTKKG   K L I
Sbjct: 295  GIMGEGKAGTEGIADFNPEDIESISILSGPSAAALYGSSAANGVVLITTKKGQEGK-LQI 353

Query: 256  SFSHDETFDNAYALPDMQQEYGSGFTPRDFIKGANGMNQINSASYGFSFGPKLDGSTILD 315
            SFS    F  AY +P+ Q  YG+            GM +        S+G KL      D
Sbjct: 354  SFSSSSEFSKAYMVPEFQNTYGN----------KEGMFE--------SWGDKLARPNSYD 395

Query: 316  IDGRQISNSILNNPLSLYETG-RYVNSNISMQGGNEKTTFRFSYANNFTKGISPYNKLNR 374
                             + TG  ++NS     G  +  TF  S ++  +KGI P N  +R
Sbjct: 396  PKS------------DFFNTGTNFINSLTLSTGTKQNQTFA-SVSSTNSKGIVPNNSYDR 442

Query: 375  HTFNFRGTQR-LGDAVVIDATASY---------SNVRGFNP-------QRISGDNSLIYG 417
              F  R T   L D + +D  ASY         S  + +NP        R      +   
Sbjct: 443  LNFTIRNTATFLDDKLQLDLGASYVKQEDKNMVSQGQYWNPVISAYLFPRGEDFEDIKTF 502

Query: 418  LTWGYPTNFDLDYWKDNYIDPVNGGRSTVDPFTTNQLFFRLNKFSQIQNENNFRGTINAK 477
              +    N  + YW     D   G +   +P+ T       N+      ++ +   +   
Sbjct: 503  ERYDQSRNIPIQYWP--IADATYGSQ---NPYWTAYRNIATNE------KSRYMFNVGLS 551

Query: 478  TNFTKWLQLETSASLNWYNTNKEDRELG-QDPGFKGGYYG-SGIRNVIDSRYRAG--LNL 533
               T W+ L     ++  +   E +     D  F  G  G     N  D +  A   LN+
Sbjct: 552  YKITDWMNLAGRYRMDDTHVQFERKVYATSDQKFAEGKKGLYDYSNYKDRQEYADFMLNI 611

Query: 534  NHKVNDFDLFLQLGSEVVRSQSKGANY-GTSGGLKVPAQYRLSNSINTPTVGEGTPNISQ 592
            N + NDF++   LG       S    Y GT  G+         +  N     +G  +  +
Sbjct: 612  NKQFNDFNISANLGYSYSNYWSLARGYKGTLLGVTNLFAASNIDPSNGRISEDGGDSRVR 671

Query: 593  VFASYAQGSIGYKNWLTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFTDALKMPS 652
              A +A   +G+++ L L L  R +WNS LV    T   ++FYP   L+ I ++ +K+P 
Sbjct: 672  NHAIFANVELGWRSMLYLTLTGRNDWNSRLV---NTSEESFFYPSVGLSGIISEMVKLPE 728

Query: 653  VFSYGKLRASYVVTGGGTVVYRSNTGYYLKGSNYQAVNSNTANIEQYGFDSQTLGNPDLK 712
              SY K+R SY   G       S +G          +    A    Y F        D K
Sbjct: 729  FISYLKVRGSYTEVGSPV----SQSGLTPGTVTTPIIGGALAPTGIYPF-------TDFK 777

Query: 713  PLRAFSKEIGIELKMFKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQDQG 772
              R  S E+G+ ++++ N+L  + T Y+ NT NQ     +P  SG +   + +G+VQ+ G
Sbjct: 778  AERTRSYELGLSVRLW-NKLSAEVTYYKSNTYNQTFIGDLPEFSGYKQIYLQAGNVQNHG 836

Query: 773  IEFILSGTPIKTQSFSWDAFFNYTRNRNKI--------ISLAPGVTTVQLEGGDGIRTIA 824
             E  L G       FS+ +   ++RN N+I          ++P    V     D  R I 
Sbjct: 837  WEASL-GYRDSFGDFSFSSNLTFSRNVNEIKEMVENYRTDMSPEPINVPEVRKDNGRVIL 895

Query: 825  KVGGEYSTLVAAYGYAKYQARDANGNPIDNPNNGKRVISPAGTGGAFYTRASNYANGLES 884
            KVGG  + + A      +  +D+ G                     +     + + GLE 
Sbjct: 896  KVGGSINDIYA----NTFLKKDSQG---------------------YVEIKQDGSYGLEQ 930

Query: 885  ESTI--GSTLPKFYGSIRNVFTYKSLSLSALIDAKFGGYVFSDTYFYGSQTGNLKNTLFG 942
               +  G T P F     N  +YK   LS LI+ +FGG V S T     + G        
Sbjct: 931  GEPVFLGKTSPDFNLGWSNSLSYKGFGLSFLINGRFGGVVTSSTQAILDRFG-------- 982

Query: 943  RTVENGGTAYTEAGNQEIGVVLDGVFADGTIINGVNVGGMSHQQAIDKGLRIPTITWRYY 1002
              V        +AG    GV+L G            V   S+ Q I  G      T  YY
Sbjct: 983  --VSKASAEARDAG----GVLLPG---------QGRVDAQSYYQLIGTG---DYTTSGYY 1024

Query: 1003 NNSNGWGNGIRERGAFKSSWVAVRDITLSYDLPKAFVSKIKMNGVKVYASARNIGFLYNN 1062
                           + ++ + ++++TLSY  P  +   + +  V +   A N   LY+ 
Sbjct: 1025 --------------VYSATNIRLQELTLSYRFPDLWFKNV-LKDVTLSFIANNPWMLYSK 1069

Query: 1063 APDNLNVNDFTST-GAGGAFLGGGTPYVRTFGLGI 1096
            AP +  +     T G G  +     P VR+FG GI
Sbjct: 1070 APHDPELTPSVGTYGQGNDYF--MQPSVRSFGFGI 1102