Pairwise Alignments

Query, 1100 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

Subject, 866 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  249 bits (636), Expect = 6e-70
 Identities = 231/774 (29%), Positives = 351/774 (45%), Gaps = 83/774 (10%)

Query: 24  QKTVSGTVTDNQGLPLAGVSVFLKGTTKGTSTSTEGKYTLSVPS-NSTIVFKYLGYLNKE 82
           ++ ++GTV D  G PL GVS+  K + +GT T  +G Y LS  S N  +VF Y+GY +KE
Sbjct: 136 ERLIAGTVKDKNGEPLIGVSIREKSSGEGTITDMDGNYKLSTLSANPVLVFSYVGYQSKE 195

Query: 83  VSVGDNNTINVTLLDDAKALGEVVVTGLGEERNTRNLGYAMNNIKGDQIRAANTINPIAA 142
           V V   N  NV L D  + L EVVVT LG +R+ + L Y +  + GD++      N I++
Sbjct: 196 VPV-KGNVANVVLEDATQELNEVVVTALGIKRSEKALSYNVQQLSGDELTTVKDANFISS 254

Query: 143 LQGLVPGMMVQPG--TGGPQSSPKFQIRGASSLYGSENTPLIVVDGVILSDDAMSPARAG 200
           L G V G+ +     TGG   + +  +RG  S+  S N  L V+DGV + +  M+    G
Sbjct: 255 LNGKVAGVNINSSNTTGG---ASRVVMRGVKSITSS-NLALYVIDGVPMYN-MMNGGGGG 309

Query: 201 --DQDFGNVLKSINSDDIESISVLKGGSVTALYGSRAINGVLLITTKKGFAQKGLGISFS 258
             DQ   +    IN +DIESIS+L G S  ALYG+ A  GV+LITTKKG A K   ++ S
Sbjct: 310 IYDQQGTDGAADINPEDIESISMLTGPSAAALYGNAAAAGVVLITTKKGSADK-TSVTVS 368

Query: 259 HDETFDNAYALPDMQQEYGSGFTPRDFIKGANGMNQINSASYGFSFGPKLDGSTILDIDG 318
           ++ TF     +P+MQ +YG               N  NS     S+GP ++     D D 
Sbjct: 369 NNTTFSKVSMMPEMQSKYG---------------NLPNSLD---SWGPIVNS----DYD- 405

Query: 319 RQISNSILNNPLSLYETGRYVNSNISMQGGNEKTTFRFSYANNFTKGISPYNKLNRHTFN 378
                     P   ++TG  V ++ ++  GN+K     S +   T  I P +  NR+ F 
Sbjct: 406 ----------PRDFFQTGANVINSFALSTGNKKNQAYLSASTTNTTNILPNSGYNRYNFT 455

Query: 379 FRGTQR-LGDAVVIDATASYSNVRGFNPQRISGDNSLIYGLTWGYPTNFDLDYWKDNYID 437
            R T   L D + +DA ASY      N        + + GL + +P + + D       +
Sbjct: 456 VRNTTSFLKDKMTLDAGASYILQNDKNMMSQGYYYNPLPGL-YRFPRSENFD--DVRMFE 512

Query: 438 PVNGGRSTVDPF-----TTNQL---FFRLNKFSQIQNENNFRGTINA--KTNFTKWLQLE 487
             N G   ++ +     T++ L   ++  N+  Q++     R  INA  K     WL + 
Sbjct: 513 RYNSGMDLMEQYWPYGGTSSGLANPYWIQNR--QLRENKKTRYMINASLKYQLFDWLDVV 570

Query: 488 TSASLNWY---NTNKEDRELGQDPGFKGGYYGSGIRNVIDSRYRAGLNLNHKVNDFDLFL 544
               ++ Y   +T K     G       G Y        ++   A   LN   ND+ + +
Sbjct: 571 GRVKIDNYDNRSTYKAYASTGTLVSGDRGTYSDTSTQSKNTYADAIATLNKSFNDWSVNV 630

Query: 545 QLGSEVVRSQSKGANYGTSGGLKVPAQYRLSN-SINTPTVGEGTPNISQVFASYAQGSIG 603
            LG  V  S S+    G  GGLK+   + + N   N     + +    Q  A +A   IG
Sbjct: 631 NLG--VSLSDSRYEMIGYEGGLKLINFFAVHNIDFNKAWKAKQSGWHDQTRAIFANAEIG 688

Query: 604 YKNWLTLNLYARKEWNSTLVYSNGTGNYNYFYPGADLAWIFTDALKMPSVFSYGKLRASY 663
           +K+ + L    R +W+S L +S+     ++FYP   L+ I T     P   +Y K+R SY
Sbjct: 689 WKSMIYLTATGRNDWDSRLAFSD---YKSFFYPSIGLSAILTSMFNAPDWLTYLKVRGSY 745

Query: 664 VVTGGGTVVYRSNTGYYLKGSNYQAVNSNTANIEQYGFDSQTLGNPDLKPLRAFSKEIGI 723
              G     + +   Y      Y     +  +   Y        N  LKP R  S E+G+
Sbjct: 746 TEVGNSYGRFMTTVTY-----PYDEQTQSWTSTSSY-------PNTKLKPERTKSWEVGL 793

Query: 724 ELKMFKNRLGLDFTAYRKNTKNQIINLSVPSESGVQNRLINSGDVQDQGIEFIL 777
           + ++  N + L+ T YR NT NQ     +   SG  N  I SG++ ++G+E  L
Sbjct: 794 DARIL-NDISLNLTYYRSNTYNQTFYADLSLSSGYSNIPIQSGNIMNEGLEMSL 846